Uses of Package
org.expasy.mzjava.core.ms.spectrum

Packages that use org.expasy.mzjava.core.ms.spectrum

Package	Description
org.expasy.mzjava.avro.io
org.expasy.mzjava.core.io.ms.spectrum
org.expasy.mzjava.core.io.ms.spectrum.mgf
org.expasy.mzjava.core.mol
org.expasy.mzjava.core.ms.consensus
org.expasy.mzjava.core.ms.peaklist.peakfilter
org.expasy.mzjava.core.ms.spectrum
org.expasy.mzjava.external.io.ms.spectrum
org.expasy.mzjava.external.io.ms.spectrum.mzml
org.expasy.mzjava.glycomics.mol
org.expasy.mzjava.glycomics.ms.fragment
org.expasy.mzjava.glycomics.ms.spectrum
org.expasy.mzjava.hadoop.io
org.expasy.mzjava.proteomics.io.ms.ident
org.expasy.mzjava.proteomics.io.ms.spectrum
org.expasy.mzjava.proteomics.mol
org.expasy.mzjava.proteomics.ms.consensus
org.expasy.mzjava.proteomics.ms.dbsearch
org.expasy.mzjava.proteomics.ms.fragment
org.expasy.mzjava.proteomics.ms.ident
org.expasy.mzjava.proteomics.ms.spectrum
org.expasy.mzjava.spark
org.expasy.mzjava.utils.function

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.avro.io

Class and Description
LibPeakAnnotation
MsnSpectrum
RetentionTimeDiscrete The retention time is the time it takes for a particular analyte to pass through the liquid chromatography system (from the column inlet to the detector) under set conditions.
RetentionTimeInterval A retention time that stores a time interval.
RetentionTimeList
ScanNumberDiscrete
ScanNumberInterval
ScanNumberList

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.io.ms.spectrum

Class and Description
MsnSpectrum
RetentionTime A retention time can either be a discrete time number or a time interval.
RetentionTimeList
ScanNumber A scan number can either be a discrete number or a number interval.
ScanNumberList
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.io.ms.spectrum.mgf

Class and Description
MsnSpectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.mol

Class and Description
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.ms.consensus

Class and Description
LibPeakAnnotation
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.ms.peaklist.peakfilter

Class and Description
LibPeakAnnotation

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.core.ms.spectrum

Class and Description
AnnotatedPeak A peak that has a list of peak annotations.
FragmentType An enum to represent the types of fragments
IonType
LibPeakAnnotation
MsnSpectrum
RetentionTime A retention time can either be a discrete time number or a time interval.
RetentionTimeDiscrete The retention time is the time it takes for a particular analyte to pass through the liquid chromatography system (from the column inlet to the detector) under set conditions.
RetentionTimeInterval A retention time that stores a time interval.
RetentionTimeList
ScanNumber A scan number can either be a discrete number or a number interval.
ScanNumberList
Spectrum
TimeUnit Retention time unit

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.external.io.ms.spectrum

Class and Description
MsnSpectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.external.io.ms.spectrum.mzml

Class and Description
MsnSpectrum
RetentionTime A retention time can either be a discrete time number or a time interval.
ScanNumber A scan number can either be a discrete number or a number interval.

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.glycomics.mol

Class and Description
FragmentType An enum to represent the types of fragments
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.glycomics.ms.fragment

Class and Description
AnnotatedPeak A peak that has a list of peak annotations.
FragmentType An enum to represent the types of fragments
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.glycomics.ms.spectrum

Class and Description
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.hadoop.io

Class and Description
MsnSpectrum
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.io.ms.ident

Class and Description
MsnSpectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.io.ms.spectrum

Class and Description
MsnSpectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.mol

Class and Description
FragmentType An enum to represent the types of fragments
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.ms.consensus

Class and Description
LibPeakAnnotation
RetentionTimeDiscrete The retention time is the time it takes for a particular analyte to pass through the liquid chromatography system (from the column inlet to the detector) under set conditions.
RetentionTimeList
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.ms.dbsearch

Class and Description
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.ms.fragment

Class and Description
AnnotatedPeak A peak that has a list of peak annotations.
FragmentType An enum to represent the types of fragments
IonType

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.ms.ident

Class and Description
MsnSpectrum
RetentionTime A retention time can either be a discrete time number or a time interval.
RetentionTimeList
ScanNumber A scan number can either be a discrete number or a number interval.
ScanNumberList
TimeUnit Retention time unit

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.proteomics.ms.spectrum

Class and Description
IonType
LibPeakAnnotation
Spectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.spark

Class and Description
MsnSpectrum

Classes in org.expasy.mzjava.core.ms.spectrum used by org.expasy.mzjava.utils.function

Class and Description
MsnSpectrum
RetentionTimeDiscrete The retention time is the time it takes for a particular analyte to pass through the liquid chromatography system (from the column inlet to the detector) under set conditions.