| Class | Description |
|---|---|
| AAMassCalculator | |
| AminoAcidSequence |
Abstract amino acid sequence base class.
|
| ModifiedPeptideFactory |
This factory creates modified
Peptides given an Peptide source
and a set of targeted AAs/variable modifications. |
| ModifiedPeptideFactory.Builder | |
| Peptide | |
| PeptideBuilder |
A builder for constructing Peptides
|
| PeptideFragment | |
| Protein | |
| Protein.Builder |
| Enum | Description |
|---|---|
| AminoAcid |
Enum that represents the 21 Proteinogenic amino acids and 3 B, Z and X to represent
amino acids for which there is ambiguity.
|
| Exception | Description |
|---|---|
| PeptideParseException |
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