| Interface | Description |
|---|---|
| CleavageSiteFinder | |
| CleavageSiteVisitor | |
| DigestionController |
This interface delegates to callbacks to control the digestion handled by
ProteinDigester. |
| Class | Description |
|---|---|
| AcceptAllDigestionController |
DigestionController that accepts all peptides and does not interrupt the digestion.
|
| CleavageSiteFinderImpl |
The default implementation of CleavageSiteFinder
|
| CleavageSiteMatcher |
This matcher is used to find the sites of cleavage in an amino-acid sequence.
|
| LengthDigestionController |
DigestionController that excludes peptides that fall outside the length range.
|
| ProteinDigester |
A
ProteinDigester is defined by a name and a cleavage site matcher
that match the sites to be digested. |
| ProteinDigester.Builder |
| Enum | Description |
|---|---|
| Protease |
http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html
|
| ProteinDigester.CleavageSiteIteration |
| Exception | Description |
|---|---|
| CleavageSiteParseException |
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