org.expasy.mzjava.proteomics.mol.digest

Class ProteinDigester.Builder

java.lang.Object

org.expasy.mzjava.proteomics.mol.digest.ProteinDigester.Builder

Enclosing class:

ProteinDigester

public static class ProteinDigester.Builder
extends Object

Constructor Summary

Constructors

Constructor and Description
ProteinDigester.Builder(CleavageSiteMatcher cleavageSiteMatcher)
ProteinDigester.Builder(Protease protease)

Method Summary

Methods

Modifier and Type	Method and Description
ProteinDigester.Builder	addFixedMod(AminoAcid target, Modification mod)
ProteinDigester	build()
ProteinDigester.Builder	cleavageSiteIteration(ProteinDigester.CleavageSiteIteration mode)
ProteinDigester.Builder	controller(DigestionController cb)
ProteinDigester.Builder	missedCleavageMax(int max)
ProteinDigester.Builder	semi()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinDigester.Builder

public ProteinDigester.Builder(Protease protease)

ProteinDigester.Builder

public ProteinDigester.Builder(CleavageSiteMatcher cleavageSiteMatcher)

Method Detail

semi

public ProteinDigester.Builder semi()

cleavageSiteIteration

public ProteinDigester.Builder cleavageSiteIteration(ProteinDigester.CleavageSiteIteration mode)

controller

public ProteinDigester.Builder controller(DigestionController cb)

missedCleavageMax

public ProteinDigester.Builder missedCleavageMax(int max)

addFixedMod

public ProteinDigester.Builder addFixedMod(AminoAcid target,
                                  Modification mod)

build

public ProteinDigester build()