org.expasy.mzjava.proteomics.mol.modification

Class Modification

java.lang.Object

org.expasy.mzjava.proteomics.mol.modification.Modification

All Implemented Interfaces:

Weighable

Direct Known Subclasses:

UnimodMod

public class Modification
extends Object
implements Weighable

Version:

1.0

Author:

Oliver Horlacher

Field Summary

Fields

Modifier and Type	Field and Description
static Pattern	parsePattern

Constructor Summary

Constructors

Constructor and Description
Modification(String label, Mass mass)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
String	getLabel()
Mass	getMass()
double	getMolecularMass() Return the molecular mass
int	hashCode()
static Modification	parseModification(String s) Parse a modification.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

parsePattern

public static final Pattern parsePattern

Constructor Detail

Modification

public Modification(String label,
            Mass mass)

Method Detail

getLabel

public String getLabel()

getMass

public Mass getMass()

getMolecularMass

public double getMolecularMass()

Description copied from interface: Weighable

Return the molecular mass

Specified by:

getMolecularMass in interface Weighable

Returns:

the weight

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object

parseModification

public static Modification parseModification(String s)

Parse a modification. The format is (label:)?formula. An optional label followed by a formula delimited by :

Parameters:

s - the string to parse

Returns:

the parsed Modification

Throws:

IllegalArgumentException - - if s is not a valid modification