org.expasy.mzjava.proteomics.mol.digest

Interface CleavageSiteFinder

All Known Implementing Classes:

CleavageSiteFinderImpl, Protease

public interface CleavageSiteFinder

Author:

fnikitin

Method Summary

Methods

Modifier and Type	Method and Description
int	countCleavageSites(SymbolSequence<AminoAcid> aaSeq) Get the number of potential cleavage sites
void	find(SymbolSequence<AminoAcid> aaSeq, gnu.trove.list.TIntList sites) Find potential cleavage sites over the given amino-acid sequence
CleavageSiteMatcher	getCleavageSiteMatcher() Get the cleavage site matcher

Method Detail

find

void find(SymbolSequence<AminoAcid> aaSeq,
        gnu.trove.list.TIntList sites)

Find potential cleavage sites over the given amino-acid sequence

countCleavageSites

int countCleavageSites(SymbolSequence<AminoAcid> aaSeq)

Get the number of potential cleavage sites

getCleavageSiteMatcher

CleavageSiteMatcher getCleavageSiteMatcher()

Get the cleavage site matcher