Uses of Class
org.expasy.mzjava.core.ms.spectrum.AnnotatedPeak

Packages that use AnnotatedPeak

Package	Description
org.expasy.mzjava.core.ms.spectrum
org.expasy.mzjava.glycomics.ms.fragment
org.expasy.mzjava.proteomics.ms.fragment

Uses of AnnotatedPeak in org.expasy.mzjava.core.ms.spectrum

Methods in org.expasy.mzjava.core.ms.spectrum that return AnnotatedPeak

Modifier and Type	Method and Description
AnnotatedPeak<A>	AnnotatedPeak.copy()

Constructors in org.expasy.mzjava.core.ms.spectrum with parameters of type AnnotatedPeak

Constructor and Description
AnnotatedPeak(AnnotatedPeak<A> src) Copy constructor.

Uses of AnnotatedPeak in org.expasy.mzjava.glycomics.ms.fragment

Methods in org.expasy.mzjava.glycomics.ms.fragment that return types with arguments of type AnnotatedPeak

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	GlycanPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<GlycanFragAnnotation>>	GlycanFragmentPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.

Method parameters in org.expasy.mzjava.glycomics.ms.fragment with type arguments of type AnnotatedPeak

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	GlycanPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<GlycanFragAnnotation>>	GlycanFragmentPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.

Uses of AnnotatedPeak in org.expasy.mzjava.proteomics.ms.fragment

Methods in org.expasy.mzjava.proteomics.ms.fragment that return types with arguments of type AnnotatedPeak

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	PeptidePeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<A>> peaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<PepFragAnnotation>>	PeptideNeutralLossPeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<PepFragAnnotation>> peaks)
List<AnnotatedPeak<PepFragAnnotation>>	BackbonePeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<PepFragAnnotation>> peaks)

Method parameters in org.expasy.mzjava.proteomics.ms.fragment with type arguments of type AnnotatedPeak

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	PeptidePeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<A>> peaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<PepFragAnnotation>>	PeptideNeutralLossPeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<PepFragAnnotation>> peaks)
List<AnnotatedPeak<PepFragAnnotation>>	BackbonePeakGenerator.generatePeaks(Peptide precursor, PeptideFragment fragment, int[] charges, List<AnnotatedPeak<PepFragAnnotation>> peaks)