org.expasy.mzjava.glycomics.ms.fragment

Interface GlycanPeakGenerator<A extends PeakAnnotation>

All Known Implementing Classes:

GlycanFragmentPeakGenerator

public interface GlycanPeakGenerator<A extends PeakAnnotation>

Version:

sqrt -1.

Author:

Davide Alocci

Method Summary

Methods

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.
Set<FragmentType>	getFragmentTypes() Return the set of fragment type used in the peak generator.

Method Detail

generatePeaks

List<AnnotatedPeak<A>> generatePeaks(Glycan precursor,
                                   GlycanFragment fragment,
                                   int[] charges,
                                   List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks)

Generate peaks that are observed for the fragment at the supplied charge states. The generated peaks are to be added to peaks.

Parameters:

precursor - the glycan that this fragment was derived from.

fragment - the fragment of the glycan.

charges - the charges for which to generate peaks.

Returns:

the peaks list that was passed in.

getFragmentTypes

Set<FragmentType> getFragmentTypes()

Return the set of fragment type used in the peak generator.

Returns:

the fragment type used in the peak generator.