Package org.expasy.mzjava.proteomics.ms.fragment

Interface Summary

Interface	Description
PeptidePeakGenerator<A extends PeakAnnotation>

Class Summary

Class	Description
BackbonePeakGenerator
PeptideFragmentAnnotator	This facade highly simplifies and hides the complexity of annotated a peakList given a peptide as this process implies peptide fragmentation, aligning peaks and reporting annotations.
PeptideFragmenter
PeptideFragmenterFactory	Creates custom made PeptideFragmenter instances
PeptideNeutralLossPeakGenerator	Generates a neutral loss for a peptide fragment if the modificationPredicate accepts the fragment.
PeptideNeutralLossPeakGenerator.ModifiedAaPresencePredicate	Accepts a PeptideFragment if the fragment contains an amino acid in aminoAcids that has a modification which is equal to the mass of one modification in modifications.