org.expasy.mzjava.proteomics.ms.fragment

Class PeptideNeutralLossPeakGenerator.ModifiedAaPresencePredicate

java.lang.Object

org.expasy.mzjava.proteomics.ms.fragment.PeptideNeutralLossPeakGenerator.ModifiedAaPresencePredicate

All Implemented Interfaces:

com.google.common.base.Predicate<PeptideFragment>

Enclosing class:

PeptideNeutralLossPeakGenerator

public static class PeptideNeutralLossPeakGenerator.ModifiedAaPresencePredicate
extends Object
implements com.google.common.base.Predicate<PeptideFragment>

Accepts a PeptideFragment if the fragment contains an amino acid in aminoAcids that has a modification which is equal to the mass of one modification in modifications.

For example if the amino acid set is {S, T} and the modification set is {HPO3:phosphate} then a neutral loss is generated for PEPTS(HPO3)IDE, PEPTS(HPO3:phosphate)IDE and PEPTS(H1P1O3)IDE but not PEPTS(79.9)IDE or PEPTS(79.9:phosphate)IDE

Method Summary

Methods

Modifier and Type	Method and Description
boolean	apply(PeptideFragment fragment)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.google.common.base.Predicate

equals

Method Detail

apply

public boolean apply(PeptideFragment fragment)

Specified by:

apply in interface com.google.common.base.Predicate<PeptideFragment>