Uses of Interface
org.expasy.mzjava.core.ms.spectrum.RetentionTime

Packages that use RetentionTime

Package	Description
org.expasy.mzjava.core.io.ms.spectrum
org.expasy.mzjava.core.ms.spectrum
org.expasy.mzjava.external.io.ms.spectrum.mzml
org.expasy.mzjava.proteomics.ms.ident

Uses of RetentionTime in org.expasy.mzjava.core.io.ms.spectrum

Methods in org.expasy.mzjava.core.io.ms.spectrum that return types with arguments of type RetentionTime

Modifier and Type	Method and Description
protected abstract List<RetentionTime>	AbstractMgfWriter.extractRetentionTime(M metaData)
protected List<RetentionTime>	MgfWriter.extractRetentionTime(MsnSpectrum spectrum)

Uses of RetentionTime in org.expasy.mzjava.core.ms.spectrum

Classes in org.expasy.mzjava.core.ms.spectrum that implement RetentionTime

Modifier and Type	Class and Description
class	RetentionTimeDiscrete The retention time is the time it takes for a particular analyte to pass through the liquid chromatography system (from the column inlet to the detector) under set conditions.
class	RetentionTimeInterval A retention time that stores a time interval.

Methods in org.expasy.mzjava.core.ms.spectrum that return RetentionTime

Modifier and Type	Method and Description
RetentionTime	RetentionTime.copy()
RetentionTime	RetentionTimeList.getFirst()
RetentionTime	RetentionTimeList.getLast()

Methods in org.expasy.mzjava.core.ms.spectrum with parameters of type RetentionTime

Modifier and Type	Method and Description
void	MsnSpectrum.addRetentionTime(RetentionTime retentionTime) Add the retentionTime to this MsnSpectrum's retention time list
int	RetentionTimeComparator.compare(RetentionTime t1, RetentionTime t2)
boolean	RetentionTimeInterval.contains(RetentionTime retentionTime)
boolean	RetentionTime.contains(RetentionTime retentionTime)
boolean	RetentionTimeDiscrete.contains(RetentionTime retentionTime)

Constructors in org.expasy.mzjava.core.ms.spectrum with parameters of type RetentionTime

Constructor and Description
RetentionTimeList(RetentionTime... retentionTimes)

Uses of RetentionTime in org.expasy.mzjava.external.io.ms.spectrum.mzml

Methods in org.expasy.mzjava.external.io.ms.spectrum.mzml that return RetentionTime

Modifier and Type	Method and Description
static RetentionTime	CVParamHelper.searchRetentionTime(List<uk.ac.ebi.jmzml.model.mzml.CVParam> cvParams, String id)

Uses of RetentionTime in org.expasy.mzjava.proteomics.ms.ident

Methods in org.expasy.mzjava.proteomics.ms.ident with parameters of type RetentionTime

Modifier and Type	Method and Description
void	SpectrumIdentifier.addRetentionTime(RetentionTime retentionTime)