org.expasy.mzjava.proteomics.ms.ident

Class SpectrumIdentifier

java.lang.Object

org.expasy.mzjava.proteomics.ms.ident.SpectrumIdentifier

public class SpectrumIdentifier
extends Object

Version:

1.0

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
SpectrumIdentifier(String spectrum)

Method Summary

Methods

Modifier and Type	Method and Description
void	addRetentionTime(double time, TimeUnit timeUnit)
void	addRetentionTime(RetentionTime retentionTime)
void	addRetentionTime(RetentionTimeList retentionTimes)
void	addScanNumber(int scanNumber)
void	addScanNumber(ScanNumber scanNumber)
void	addScanNumber(ScanNumberList scanNumbers)
void	addScanNumbers(ScanNumberList scanNumbers)
boolean	equals(Object o)
com.google.common.base.Optional<Integer>	getAssumedCharge()
com.google.common.base.Optional<Integer>	getIndex()
com.google.common.base.Optional<String>	getName()
com.google.common.base.Optional<Double>	getPrecursorIntensity()
com.google.common.base.Optional<Double>	getPrecursorMz()
com.google.common.base.Optional<Double>	getPrecursorNeutralMass()
RetentionTimeList	getRetentionTimes()
ScanNumberList	getScanNumbers()
String	getSpectrum()
com.google.common.base.Optional<String>	getSpectrumFile()
int	hashCode()
void	setAssumedCharge(int assumedCharge)
void	setIndex(int index)
void	setName(String name)
void	setPrecursorIntensity(double precursorIntensity)
void	setPrecursorMz(double precursorMz)
void	setPrecursorNeutralMass(double precursorNeutralMass)
void	setSpectrumFile(String spectrumFile)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SpectrumIdentifier

public SpectrumIdentifier(String spectrum)

Method Detail

getSpectrumFile

public com.google.common.base.Optional<String> getSpectrumFile()

setSpectrumFile

public void setSpectrumFile(String spectrumFile)

getSpectrum

public String getSpectrum()

getScanNumbers

public ScanNumberList getScanNumbers()

addScanNumbers

public void addScanNumbers(ScanNumberList scanNumbers)

addScanNumber

public void addScanNumber(ScanNumber scanNumber)

addScanNumber

public void addScanNumber(int scanNumber)

addRetentionTime

public void addRetentionTime(double time,
                    TimeUnit timeUnit)

addRetentionTime

public void addRetentionTime(RetentionTime retentionTime)

getRetentionTimes

public RetentionTimeList getRetentionTimes()

getPrecursorNeutralMass

public com.google.common.base.Optional<Double> getPrecursorNeutralMass()

setPrecursorNeutralMass

public void setPrecursorNeutralMass(double precursorNeutralMass)

getPrecursorMz

public com.google.common.base.Optional<Double> getPrecursorMz()

setPrecursorMz

public void setPrecursorMz(double precursorMz)

getAssumedCharge

public com.google.common.base.Optional<Integer> getAssumedCharge()

setAssumedCharge

public void setAssumedCharge(int assumedCharge)

getIndex

public com.google.common.base.Optional<Integer> getIndex()

setIndex

public void setIndex(int index)

getPrecursorIntensity

public com.google.common.base.Optional<Double> getPrecursorIntensity()

setPrecursorIntensity

public void setPrecursorIntensity(double precursorIntensity)

getName

public com.google.common.base.Optional<String> getName()

setName

public void setName(String name)

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

addRetentionTime

public void addRetentionTime(RetentionTimeList retentionTimes)

addScanNumber

public void addScanNumber(ScanNumberList scanNumbers)