org.expasy.mzjava.proteomics.ms.ident

Class SearchResultMap

java.lang.Object

org.expasy.mzjava.proteomics.ms.ident.SearchResultMap

Direct Known Subclasses:

ScanNumberIndexSearchResultMap, ScanNumberSearchResultMap, TitleSearchResultMap

public abstract class SearchResultMap
extends Object

Version:

1.0

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
SearchResultMap()

Method Summary

Methods

Modifier and Type	Method and Description
protected abstract void	doPut(SpectrumIdentifier identifier, PeptideMatch searchResult)
com.google.common.base.Optional<SpectrumIdentifier>	getIdentifier(PeptideMatch searchResult)
abstract List<PeptideMatch>	getResults(MsnSpectrum spectrum)
void	put(SpectrumIdentifier identifier, PeptideMatch searchResult)
protected static String	removeExtension(String name) Removes the file extension

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SearchResultMap

public SearchResultMap()

Method Detail

getResults

public abstract List<PeptideMatch> getResults(MsnSpectrum spectrum)

getIdentifier

public com.google.common.base.Optional<SpectrumIdentifier> getIdentifier(PeptideMatch searchResult)

put

public void put(SpectrumIdentifier identifier,
       PeptideMatch searchResult)

doPut

protected abstract void doPut(SpectrumIdentifier identifier,
         PeptideMatch searchResult)

removeExtension

protected static String removeExtension(String name)

Removes the file extension

Parameters:

name - the name of the file

Returns:

the name of the file without the extension