org.expasy.mzjava.proteomics.ms.ident

Class ScanNumberIndexSearchResultMap

java.lang.Object

org.expasy.mzjava.proteomics.ms.ident.SearchResultMap

org.expasy.mzjava.proteomics.ms.ident.ScanNumberIndexSearchResultMap

public class ScanNumberIndexSearchResultMap
extends SearchResultMap

Maps the scan number of the pep xml to the index of the spectrum and corrects for index offsets. The pep xml scan number start at 1 and the spectrum index starts at 0.

Version:

sqrt -1

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
ScanNumberIndexSearchResultMap()

Method Summary

Methods

Modifier and Type	Method and Description
void	doPut(SpectrumIdentifier identifier, PeptideMatch searchResult)
List<PeptideMatch>	getResults(MsnSpectrum spectrum)

Methods inherited from class org.expasy.mzjava.proteomics.ms.ident.SearchResultMap

getIdentifier, put, removeExtension

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScanNumberIndexSearchResultMap

public ScanNumberIndexSearchResultMap()

Method Detail

getResults

public List<PeptideMatch> getResults(MsnSpectrum spectrum)

Specified by:

getResults in class SearchResultMap

doPut

public void doPut(SpectrumIdentifier identifier,
         PeptideMatch searchResult)

Specified by:

doPut in class SearchResultMap