Uses of Class
org.expasy.mzjava.core.ms.spectrum.Spectrum

Packages that use Spectrum

Package	Description
org.expasy.mzjava.core.io.ms.spectrum
org.expasy.mzjava.core.ms.consensus
org.expasy.mzjava.core.ms.spectrum
org.expasy.mzjava.glycomics.ms.spectrum
org.expasy.mzjava.hadoop.io
org.expasy.mzjava.proteomics.ms.consensus
org.expasy.mzjava.proteomics.ms.spectrum

Uses of Spectrum in org.expasy.mzjava.core.io.ms.spectrum

Classes in org.expasy.mzjava.core.io.ms.spectrum with type parameters of type Spectrum

Modifier and Type	Class and Description
class	AbstractMgfReader<A extends PeakAnnotation,S extends Spectrum<A>> To extend how the TITLE line is handled add more TitleParser instances using addTitleParser
class	AbstractMsReader<A extends PeakAnnotation,S extends Spectrum<A>>

Methods in org.expasy.mzjava.core.io.ms.spectrum with parameters of type Spectrum

Modifier and Type	Method and Description
protected int	AbstractMsReader.addPeakToSpectrum(Spectrum<A> spectrum, double mz, double intensity, AbstractMsReader.ParseContext context) Potentially non-order add peak to spectrum.

Uses of Spectrum in org.expasy.mzjava.core.ms.consensus

Subclasses of Spectrum in org.expasy.mzjava.core.ms.consensus

Modifier and Type	Class and Description
class	ConsensusSpectrum<A extends LibPeakAnnotation>

Uses of Spectrum in org.expasy.mzjava.core.ms.spectrum

Subclasses of Spectrum in org.expasy.mzjava.core.ms.spectrum

Modifier and Type	Class and Description
class	MsnSpectrum

Constructors in org.expasy.mzjava.core.ms.spectrum with parameters of type Spectrum

Constructor and Description
Spectrum(Spectrum<A> src, PeakProcessor<A,A> peakProcessor) Copy constructor
Spectrum(Spectrum<A> src, PeakProcessorChain<A> peakProcessorChain) Copy constructor

Uses of Spectrum in org.expasy.mzjava.glycomics.ms.spectrum

Subclasses of Spectrum in org.expasy.mzjava.glycomics.ms.spectrum

Modifier and Type	Class and Description
class	GlycanSpectrum

Constructors in org.expasy.mzjava.glycomics.ms.spectrum with parameters of type Spectrum

Constructor and Description
GlycanSpectrum(Spectrum<GlycanFragAnnotation> src, Glycan glycan, int charge) Constructor for GlycanSpectrum.

Uses of Spectrum in org.expasy.mzjava.hadoop.io

Classes in org.expasy.mzjava.hadoop.io with type parameters of type Spectrum

Modifier and Type	Class and Description
class	HadoopSpectraReader<A extends PeakAnnotation,S extends Spectrum<A>>
class	HadoopSpectraWriter<S extends Spectrum>

Uses of Spectrum in org.expasy.mzjava.proteomics.ms.consensus

Subclasses of Spectrum in org.expasy.mzjava.proteomics.ms.consensus

Modifier and Type	Class and Description
class	PeptideConsensusSpectrum

Uses of Spectrum in org.expasy.mzjava.proteomics.ms.spectrum

Subclasses of Spectrum in org.expasy.mzjava.proteomics.ms.spectrum

Modifier and Type	Class and Description
class	PeptideSpectrum

Constructors in org.expasy.mzjava.proteomics.ms.spectrum with parameters of type Spectrum

Constructor and Description
PeptideSpectrum(Spectrum<PepFragAnnotation> src, Peptide peptide, int charge)