Uses of Class
org.expasy.mzjava.core.ms.spectrum.LibPeakAnnotation

Packages that use LibPeakAnnotation

Package	Description
org.expasy.mzjava.avro.io
org.expasy.mzjava.core.ms.consensus
org.expasy.mzjava.core.ms.peaklist.peakfilter
org.expasy.mzjava.core.ms.spectrum
org.expasy.mzjava.proteomics.ms.consensus
org.expasy.mzjava.proteomics.ms.spectrum

Uses of LibPeakAnnotation in org.expasy.mzjava.avro.io

Classes in org.expasy.mzjava.avro.io with type parameters of type LibPeakAnnotation

Modifier and Type	Class and Description
class	AbstractLibPeakAnnotationWriter<A extends LibPeakAnnotation>

Methods in org.expasy.mzjava.avro.io that return LibPeakAnnotation

Modifier and Type	Method and Description
LibPeakAnnotation	LibPeakAnnotationReader.read(org.apache.avro.io.Decoder in)

Methods in org.expasy.mzjava.avro.io with parameters of type LibPeakAnnotation

Modifier and Type	Method and Description
void	LibPeakAnnotationWriter.write(LibPeakAnnotation value, org.apache.avro.io.Encoder out)
void	AbstractLibPeakAnnotationWriter.writeLibAnnotation(LibPeakAnnotation annotation, org.apache.avro.io.Encoder out)

Uses of LibPeakAnnotation in org.expasy.mzjava.core.ms.consensus

Classes in org.expasy.mzjava.core.ms.consensus with type parameters of type LibPeakAnnotation

Modifier and Type	Class and Description
class	AbstractConsensusSpectrumBuilder<A extends LibPeakAnnotation,B extends AbstractConsensusSpectrumBuilder<A,B,C>,C extends ConsensusSpectrum<A>>
class	ConsensusPeakSink<A extends LibPeakAnnotation> Peak filter that retains peaks that have a mergedPeakCount that is >= absoluteMinPeakCount && >= peakFraction*consensusSize.
class	ConsensusSpectrum<A extends LibPeakAnnotation>

Methods in org.expasy.mzjava.core.ms.consensus that return types with arguments of type LibPeakAnnotation

Modifier and Type	Method and Description
ConsensusSpectrum<LibPeakAnnotation>	ConsensusSpectrum.Builder.build()

Method parameters in org.expasy.mzjava.core.ms.consensus with type arguments of type LibPeakAnnotation

Modifier and Type	Method and Description
protected abstract void	AbstractConsensusSpectrumBuilder.calculatePrecursor(ConsensusSpectrum<? extends LibPeakAnnotation> consensus)
protected void	ConsensusSpectrum.Builder.calculatePrecursor(ConsensusSpectrum<? extends LibPeakAnnotation> consensus)

Uses of LibPeakAnnotation in org.expasy.mzjava.core.ms.peaklist.peakfilter

Classes in org.expasy.mzjava.core.ms.peaklist.peakfilter with type parameters of type LibPeakAnnotation

Modifier and Type	Class and Description
class	AbstractMergePeakFilter<IN extends PeakAnnotation,OUT extends LibPeakAnnotation> Class to merge peaks that are close together.

Methods in org.expasy.mzjava.core.ms.peaklist.peakfilter that return LibPeakAnnotation

Modifier and Type	Method and Description
protected LibPeakAnnotation	LibraryMergePeakFilter.createPeakAnnotation(int peakCount, double mzStd, double intensityStd)

Uses of LibPeakAnnotation in org.expasy.mzjava.core.ms.spectrum

Methods in org.expasy.mzjava.core.ms.spectrum that return LibPeakAnnotation

Modifier and Type	Method and Description
LibPeakAnnotation	LibPeakAnnotation.copy()

Constructors in org.expasy.mzjava.core.ms.spectrum with parameters of type LibPeakAnnotation

Constructor and Description
LibPeakAnnotation(LibPeakAnnotation src)

Uses of LibPeakAnnotation in org.expasy.mzjava.proteomics.ms.consensus

Method parameters in org.expasy.mzjava.proteomics.ms.consensus with type arguments of type LibPeakAnnotation

Modifier and Type	Method and Description
protected void	PeptideConsensusSpectrum.BuilderOld.calculatePrecursor(ConsensusSpectrum<? extends LibPeakAnnotation> consensus)

Uses of LibPeakAnnotation in org.expasy.mzjava.proteomics.ms.spectrum

Subclasses of LibPeakAnnotation in org.expasy.mzjava.proteomics.ms.spectrum

Modifier and Type	Class and Description
class	PepLibPeakAnnotation Class to store annotations of consensus peaks.