org.expasy.mzjava.proteomics.ms.consensus

Class PeptideConsensusSpectrum.BuilderOld

java.lang.Object

org.expasy.mzjava.core.ms.consensus.AbstractConsensusSpectrumBuilder<PepLibPeakAnnotation,PeptideConsensusSpectrum.BuilderOld,PeptideConsensusSpectrum>

org.expasy.mzjava.proteomics.ms.consensus.PeptideConsensusSpectrum.BuilderOld

Enclosing class:

PeptideConsensusSpectrum

public static class PeptideConsensusSpectrum.BuilderOld
extends AbstractConsensusSpectrumBuilder<PepLibPeakAnnotation,PeptideConsensusSpectrum.BuilderOld,PeptideConsensusSpectrum>

Version:

0.0

Author:

Markus Muller

Field Summary

Fields inherited from class org.expasy.mzjava.core.ms.consensus.AbstractConsensusSpectrumBuilder

fragMzTolerance, initialCapacity, intCombMeth, maxMzClusterWidth, minPeakCount, msLevel, peakFraction, spectra

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	PeptideConsensusSpectrum.BuilderOld()

Method Summary

Methods

Modifier and Type	Method and Description
PeptideConsensusSpectrum	build()
protected void	calculatePrecursor(ConsensusSpectrum<? extends LibPeakAnnotation> consensus)
PeptideConsensusSpectrum.BuilderOld	fragmenter(PeptideFragmenter fragmenter)
PeptideConsensusSpectrum.BuilderOld	peptide(Peptide peptide)
PeptideConsensusSpectrum.BuilderOld	precision(PeakList.Precision precision)
PeptideConsensusSpectrum.BuilderOld	uri(URI spectrumSource)

Methods inherited from class org.expasy.mzjava.core.ms.consensus.AbstractConsensusSpectrumBuilder

fragMzTolerance, initialCapacity, intensityCombMethod, maxMzClusterWidth, msLevel, setPeakFilterParams, spectra

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PeptideConsensusSpectrum.BuilderOld

protected PeptideConsensusSpectrum.BuilderOld()

Method Detail

peptide

public PeptideConsensusSpectrum.BuilderOld peptide(Peptide peptide)

precision

public PeptideConsensusSpectrum.BuilderOld precision(PeakList.Precision precision)

fragmenter

public PeptideConsensusSpectrum.BuilderOld fragmenter(PeptideFragmenter fragmenter)

uri

public PeptideConsensusSpectrum.BuilderOld uri(URI spectrumSource)

build

public PeptideConsensusSpectrum build()

Specified by:

build in class AbstractConsensusSpectrumBuilder<PepLibPeakAnnotation,PeptideConsensusSpectrum.BuilderOld,PeptideConsensusSpectrum>

calculatePrecursor

protected void calculatePrecursor(ConsensusSpectrum<? extends LibPeakAnnotation> consensus)

Specified by:

calculatePrecursor in class AbstractConsensusSpectrumBuilder<PepLibPeakAnnotation,PeptideConsensusSpectrum.BuilderOld,PeptideConsensusSpectrum>