| Interface | Description |
|---|---|
| PepXmlWriterBuilder.EnzymeEnd | |
| PsmReader |
A Peptide spectrum match (PSM) reader.
|
| PSMReaderCallback |
This object method is callback when a PSM is read by a
PsmReader. |
| UnknownModListener |
A listener that call back
ProteinPilotPsmReader when a read modification
has not been recognized |
| Class | Description |
|---|---|
| AbstractPsmCsvReader |
Abstract implementation of
PsmReader with a default parse template method. |
| MaxQuantPsmReader | |
| MODaPsmReader | |
| MzIdentMlReader | |
| NamespaceFilterXMLReader |
Used to add a default namespace for xml files that do not have a xmlns defined
|
| PepXmlReader | |
| PepXmlReader.NamespaceRewriteDelegate | |
| PepXmlWriter |
This Writer writes peptide identifications in PepXML format.
|
| PepXmlWriterBuilder |
This builder Builds PepXmlWriter instances.
|
| PepXmlWriterBuilder.Builder |
Build PepXmlWriter
|
| PepXmlWriterBuilder.SampleEnzymeBuilder | |
| PepXmlWriterBuilder.SpecificityBuilder | |
| ProteinPilotModificationResolver |
The default ProteinPilot Modification Resolver
|
| ProteinPilotPsmReader |
A peptide spectrum match reader for ProteinPilot Peptide Summary Overview tsv file.
|
| Enum | Description |
|---|---|
| PepXmlReader.ModMassStorage | |
| PepXmlWriter.ConsistencyCheck |
| Exception | Description |
|---|---|
| CorruptedPSMFileException |
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