Hierarchy For Package org.expasy.mzjava.proteomics.io.ms.ident

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.expasy.mzjava.proteomics.io.ms.ident.AbstractPsmCsvReader (implements org.expasy.mzjava.proteomics.io.ms.ident.PsmReader)
    • org.expasy.mzjava.proteomics.io.ms.ident.MaxQuantPsmReader
    • org.expasy.mzjava.proteomics.io.ms.ident.ProteinPilotPsmReader
  • org.expasy.mzjava.proteomics.io.ms.ident.MODaPsmReader (implements org.expasy.mzjava.proteomics.io.ms.ident.PsmReader)
  • org.expasy.mzjava.proteomics.io.ms.ident.MODaPsmReader.PeptideInfoParser
  • org.expasy.mzjava.proteomics.io.ms.ident.MODaPsmReader.PSMInfoParser
  • org.expasy.mzjava.proteomics.io.ms.ident.MODaPsmReader.SpectrumInfoParser
  • org.expasy.mzjava.proteomics.io.ms.ident.MzIdentMlReader (implements org.expasy.mzjava.proteomics.io.ms.ident.PsmReader)
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlReader (implements org.expasy.mzjava.proteomics.io.ms.ident.PsmReader)
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriter
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.Builder
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.SampleEnzymeBuilder (implements org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.EnzymeEnd)
  • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.SpecificityBuilder (implements org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.EnzymeEnd)
  • javax.xml.stream.util.StreamReaderDelegate (implements javax.xml.stream.XMLStreamReader)
    • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlReader.NamespaceRewriteDelegate
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • org.expasy.mzjava.proteomics.io.ms.ident.CorruptedPSMFileException
  • org.expasy.mzjava.proteomics.mol.modification.unimod.UnimodModificationResolver (implements org.expasy.mzjava.proteomics.mol.modification.ModificationResolver)
    • org.expasy.mzjava.proteomics.io.ms.ident.ProteinPilotModificationResolver
  • org.xml.sax.helpers.XMLFilterImpl (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler, org.xml.sax.XMLFilter)
    • org.expasy.mzjava.proteomics.io.ms.ident.NamespaceFilterXMLReader

Interface Hierarchy

• org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriterBuilder.EnzymeEnd
• org.expasy.mzjava.proteomics.io.ms.ident.PsmReader
• org.expasy.mzjava.proteomics.io.ms.ident.PSMReaderCallback
• org.expasy.mzjava.proteomics.io.ms.ident.UnknownModListener

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlWriter.ConsistencyCheck
    • org.expasy.mzjava.proteomics.io.ms.ident.PepXmlReader.ModMassStorage