org.expasy.mzjava.proteomics.io.ms.ident

Class MODaPsmReader.PeptideInfoParser

java.lang.Object

org.expasy.mzjava.proteomics.io.ms.ident.MODaPsmReader.PeptideInfoParser

Enclosing class:

MODaPsmReader

protected class MODaPsmReader.PeptideInfoParser
extends Object

Constructor Summary

Constructors

Constructor and Description
MODaPsmReader.PeptideInfoParser()

Method Summary

Methods

Modifier and Type	Method and Description
void	addModifs(PeptideMatch peptideMatch, double massDiff)
int	getModMass()
List<AminoAcid>	getSequence()
void	parse(String peptideInfo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MODaPsmReader.PeptideInfoParser

public MODaPsmReader.PeptideInfoParser()

Method Detail

parse

public void parse(String peptideInfo)

getSequence

public List<AminoAcid> getSequence()

getModMass

public int getModMass()

addModifs

public void addModifs(PeptideMatch peptideMatch,
             double massDiff)