Uses of Class
org.expasy.mzjava.glycomics.mol.SubstituentLinkage

Packages that use SubstituentLinkage

Package	Description
org.expasy.mzjava.glycomics.mol

Uses of SubstituentLinkage in org.expasy.mzjava.glycomics.mol

Fields in org.expasy.mzjava.glycomics.mol declared as SubstituentLinkage

Modifier and Type	Field and Description
static SubstituentLinkage	SubstituentLinkage.UNKNOWN

Methods in org.expasy.mzjava.glycomics.mol that return types with arguments of type SubstituentLinkage

Modifier and Type	Method and Description
com.google.common.base.Optional<SubstituentLinkage>	SaccharideGraph.getSubstituentLinkage(GlycanNode parentNode, GlycanNode childNode) Return the linkage between parentNode and childNode

Methods in org.expasy.mzjava.glycomics.mol with parameters of type SubstituentLinkage

Modifier and Type	Method and Description
Monosaccharide	SaccharideGraph.AbstractBuilder.add(Monosaccharide monosaccharide, Substituent substituent, Monosaccharide parent, GlycosidicLinkage glycoLinkage, SubstituentLinkage substituentLinkage) Add monosaccharide and substituent to the Glycan being built.
protected int	SaccharideGraph.add(Substituent child, List<Monosaccharide> parents, SubstituentLinkage linkage)
Substituent	SaccharideGraph.AbstractBuilder.add(Substituent substituent, List<Monosaccharide> parents, SubstituentLinkage linkage) Add a hyper edge from parents to substituent.
protected int	SaccharideGraph.add(Substituent child, Monosaccharide parent, SubstituentLinkage linkage)
Substituent	SaccharideGraph.AbstractBuilder.add(Substituent substituent, Monosaccharide parent, SubstituentLinkage linkage) Adda substituent to parent
Monosaccharide	GlycanFragment.Builder.addCleavedMonosaccharide(Monosaccharide cleavedMonosaccharide, Substituent substituent, Monosaccharide parent, GlycosidicLinkage glycoLinkage, SubstituentLinkage substituentLinkage, CutIndexes cutIndexes, IonType ionType) Add cleavedMonosaccharide and substituent to the Glycan being built.