org.expasy.mzjava.glycomics.mol

Class GlycosidicLinkage

java.lang.Object

org.expasy.mzjava.glycomics.mol.GlycosidicLinkage

All Implemented Interfaces:

Weighable, Linkage

public class GlycosidicLinkage
extends Object
implements Linkage

Version:

sqrt -1

Author:

Oliver Horlacher

Field Summary

Fields

Modifier and Type	Field and Description
static GlycosidicLinkage	UNKNOWN

Constructor Summary

Constructors

Constructor and Description
GlycosidicLinkage(Anomericity anomericity, Integer anomericCarbon, Integer linkedCarbon, Composition anomericComposition, Composition linkedComposition)
GlycosidicLinkage(com.google.common.base.Optional<Anomericity> anomericity, com.google.common.base.Optional<Integer> anomericCarbon, com.google.common.base.Optional<Integer> linkedCarbon, com.google.common.base.Optional<Composition> anomericComposition, com.google.common.base.Optional<Composition> linkedComposition)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
com.google.common.base.Optional<Integer>	getAnomericCarbon()
com.google.common.base.Optional<Composition>	getAnomericComposition()
com.google.common.base.Optional<Anomericity>	getAnomericity()
com.google.common.base.Optional<Integer>	getLinkedCarbon() Return the number of the linked carbon.
com.google.common.base.Optional<Composition>	getLinkedComposition() Return the composition of the linkage.
double	getMolecularMass() Return the molecular mass of hte composition change due to the linkage.
int	hashCode()
boolean	hasSetCarbon() Check if the linkage has the anomeric and the linked carbons already set.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

UNKNOWN

public static final GlycosidicLinkage UNKNOWN

Constructor Detail

GlycosidicLinkage

public GlycosidicLinkage(Anomericity anomericity,
                 Integer anomericCarbon,
                 Integer linkedCarbon,
                 Composition anomericComposition,
                 Composition linkedComposition)

GlycosidicLinkage

public GlycosidicLinkage(com.google.common.base.Optional<Anomericity> anomericity,
                 com.google.common.base.Optional<Integer> anomericCarbon,
                 com.google.common.base.Optional<Integer> linkedCarbon,
                 com.google.common.base.Optional<Composition> anomericComposition,
                 com.google.common.base.Optional<Composition> linkedComposition)

Method Detail

hasSetCarbon

public boolean hasSetCarbon()

Check if the linkage has the anomeric and the linked carbons already set.

Specified by:

hasSetCarbon in interface Linkage

Returns:

a boolean value that is true if the two carbons are set otherwise return false.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

getAnomericity

public com.google.common.base.Optional<Anomericity> getAnomericity()

getAnomericCarbon

public com.google.common.base.Optional<Integer> getAnomericCarbon()

getLinkedCarbon

public com.google.common.base.Optional<Integer> getLinkedCarbon()

Description copied from interface: Linkage

Return the number of the linked carbon.

Specified by:

getLinkedCarbon in interface Linkage

Returns:

the number of the linked carbon.

getAnomericComposition

public com.google.common.base.Optional<Composition> getAnomericComposition()

getLinkedComposition

public com.google.common.base.Optional<Composition> getLinkedComposition()

Description copied from interface: Linkage

Return the composition of the linkage.

Specified by:

getLinkedComposition in interface Linkage

Returns:

the composition of the linkage.

toString

public String toString()

Overrides:

toString in class Object

getMolecularMass

public double getMolecularMass()

Return the molecular mass of hte composition change due to the linkage.

Specified by:

getMolecularMass in interface Weighable

Returns:

the mass.