Uses of Class
org.expasy.mzjava.glycomics.mol.GlycosidicLinkage

Packages that use GlycosidicLinkage

Package	Description
org.expasy.mzjava.glycomics.mol

Uses of GlycosidicLinkage in org.expasy.mzjava.glycomics.mol

Fields in org.expasy.mzjava.glycomics.mol declared as GlycosidicLinkage

Modifier and Type	Field and Description
static GlycosidicLinkage	GlycosidicLinkage.UNKNOWN

Methods in org.expasy.mzjava.glycomics.mol that return types with arguments of type GlycosidicLinkage

Modifier and Type	Method and Description
com.google.common.base.Optional<GlycosidicLinkage>	SaccharideGraph.getGlycoLinkage(GlycanNode parentNode, GlycanNode childNode) Return the linkage between parentNode and childNode

Methods in org.expasy.mzjava.glycomics.mol with parameters of type GlycosidicLinkage

Modifier and Type	Method and Description
void	LinkageAcceptor.accept(Monosaccharide parent, Monosaccharide child, GlycosidicLinkage glycosidicLinkage)
protected int	SaccharideGraph.add(Monosaccharide child, List<Monosaccharide> parents, GlycosidicLinkage linkage)
Monosaccharide	SaccharideGraph.AbstractBuilder.add(Monosaccharide monosaccharide, List<Monosaccharide> parents, GlycosidicLinkage linkage) Adda hyper edge from the list of parents to the monosaccharide.
protected int	SaccharideGraph.add(Monosaccharide child, Monosaccharide parent, GlycosidicLinkage linkage)
Monosaccharide	SaccharideGraph.AbstractBuilder.add(Monosaccharide monosaccharide, Monosaccharide parent, GlycosidicLinkage linkage) Add a Monosaccharide to the Glycan.
Monosaccharide	SaccharideGraph.AbstractBuilder.add(Monosaccharide monosaccharide, Substituent substituent, Monosaccharide parent, GlycosidicLinkage glycoLinkage, SubstituentLinkage substituentLinkage) Add monosaccharide and substituent to the Glycan being built.
Monosaccharide	GlycanFragment.Builder.addCleavedMonosaccharide(Monosaccharide cleavedMonosaccharide, List<Monosaccharide> parents, GlycosidicLinkage linkage, CutIndexes cutIndexes, IonType ionType) Add an hyper edge from the list of parents to the cleavedMonosaccharide.
Monosaccharide	GlycanFragment.Builder.addCleavedMonosaccharide(Monosaccharide cleavedMonosaccharide, Monosaccharide parent, GlycosidicLinkage linkage, CutIndexes cutIndexes, IonType ionType) Add a Monosaccharide to the Glycan.
Monosaccharide	GlycanFragment.Builder.addCleavedMonosaccharide(Monosaccharide cleavedMonosaccharide, Substituent substituent, Monosaccharide parent, GlycosidicLinkage glycoLinkage, SubstituentLinkage substituentLinkage, CutIndexes cutIndexes, IonType ionType) Add cleavedMonosaccharide and substituent to the Glycan being built.
int	TraversalComparator.compare(Monosaccharide child1, GlycosidicLinkage linkage1, Monosaccharide child2, GlycosidicLinkage linkage2) Compares two children of a node in a SaccharideGraph for order.