org.expasy.mzjava.glycomics.mol

Class SubstituentLinkage

java.lang.Object

org.expasy.mzjava.glycomics.mol.SubstituentLinkage

All Implemented Interfaces:

Weighable, Linkage

public class SubstituentLinkage
extends Object
implements Linkage

Version:

sqrt -1

Author:

Oliver Horlacher

Field Summary

Fields

Modifier and Type	Field and Description
static SubstituentLinkage	UNKNOWN

Constructor Summary

Constructors

Constructor and Description
SubstituentLinkage(Integer linkedCarbon, Composition linkedComposition)
SubstituentLinkage(com.google.common.base.Optional<Integer> linkedCarbon, com.google.common.base.Optional<Composition> linkedComposition)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
com.google.common.base.Optional<Integer>	getLinkedCarbon() Return the number of the linked carbon.
com.google.common.base.Optional<Composition>	getLinkedComposition() Return the composition of the linkage.
double	getMolecularMass() Return the molecular mass of the composition change due to the linkage.
int	hashCode()
boolean	hasSetCarbon() Check if the linkage has the anomeric carbon already set.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

UNKNOWN

public static final SubstituentLinkage UNKNOWN

Constructor Detail

SubstituentLinkage

public SubstituentLinkage(Integer linkedCarbon,
                  Composition linkedComposition)

SubstituentLinkage

public SubstituentLinkage(com.google.common.base.Optional<Integer> linkedCarbon,
                  com.google.common.base.Optional<Composition> linkedComposition)

Method Detail

hasSetCarbon

public boolean hasSetCarbon()

Check if the linkage has the anomeric carbon already set.

Specified by:

hasSetCarbon in interface Linkage

Returns:

a boolean value that is true if the carbon is set otherwise return false.

getLinkedCarbon

public com.google.common.base.Optional<Integer> getLinkedCarbon()

Description copied from interface: Linkage

Return the number of the linked carbon.

Specified by:

getLinkedCarbon in interface Linkage

Returns:

the number of the linked carbon.

getLinkedComposition

public com.google.common.base.Optional<Composition> getLinkedComposition()

Description copied from interface: Linkage

Return the composition of the linkage.

Specified by:

getLinkedComposition in interface Linkage

Returns:

the composition of the linkage.

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object

getMolecularMass

public double getMolecularMass()

Return the molecular mass of the composition change due to the linkage.

Specified by:

getMolecularMass in interface Weighable

Returns:

the mass.