Uses of Class
org.expasy.mzjava.proteomics.ms.consensus.PeptideConsensusSpectrum

Packages that use PeptideConsensusSpectrum

Package	Description
org.expasy.mzjava.proteomics.avro.io
org.expasy.mzjava.proteomics.io.ms.spectrum
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt
org.expasy.mzjava.proteomics.ms.consensus

Uses of PeptideConsensusSpectrum in org.expasy.mzjava.proteomics.avro.io

Methods in org.expasy.mzjava.proteomics.avro.io that return PeptideConsensusSpectrum

Modifier and Type	Method and Description
protected PeptideConsensusSpectrum	PeptideConsensusSpectrumReader.newPeakList(PeakList.Precision precision, double constantIntensity)
PeptideConsensusSpectrum	PeptideConsensusSpectrumReader.read(org.apache.avro.io.Decoder in)

Methods in org.expasy.mzjava.proteomics.avro.io with parameters of type PeptideConsensusSpectrum

Modifier and Type	Method and Description
void	PeptideConsensusSpectrumWriter.write(PeptideConsensusSpectrum spectrum, org.apache.avro.io.Encoder out)

Uses of PeptideConsensusSpectrum in org.expasy.mzjava.proteomics.io.ms.spectrum

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum that return PeptideConsensusSpectrum

Modifier and Type	Method and Description
protected PeptideConsensusSpectrum	MsLibReader.parseNextEntry(AbstractMsReader.ParseContext context)

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum that return types with arguments of type PeptideConsensusSpectrum

Modifier and Type	Method and Description
static IterativeReader<PeptideConsensusSpectrum>	MsReaderFactory.newLibrarySpectraReader(File file, PeakList.Precision precision)

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum with parameters of type PeptideConsensusSpectrum

Modifier and Type	Method and Description
void	SptxtWriter.write(PeptideConsensusSpectrum spectrum)

Uses of PeptideConsensusSpectrum in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt that return PeptideConsensusSpectrum

Modifier and Type	Method and Description
PeptideConsensusSpectrum	LibrarySpectrumBuilder.build(PeakList.Precision precision, ModificationResolver modificationResolver, AnnotationResolver annotationResolver, boolean acceptUnsortedSpectra)

Uses of PeptideConsensusSpectrum in org.expasy.mzjava.proteomics.ms.consensus

Methods in org.expasy.mzjava.proteomics.ms.consensus that return PeptideConsensusSpectrum

Modifier and Type	Method and Description
PeptideConsensusSpectrum	PeptideConsensusSpectrum.BuilderOld.build()
<A extends PeakAnnotation,S extends PeakList<A>> PeptideConsensusSpectrum	PeptideConsensusSpectrum.Builder.buildConsensus(int charge, Peptide peptide, Collection<S> spectra, Set<String> proteinAccessionNumbers)
<A extends PeakAnnotation,S extends PeakList<A>> PeptideConsensusSpectrum	PeptideConsensusSpectrum.Builder.buildConsensus(int charge, Peptide peptide, Collection<S> spectra, Set<String> proteinAccessionNumbers, RetentionTimeList retentionTimes)
PeptideConsensusSpectrum	PeptideConsensusSpectrum.copy(PeakProcessor<PepLibPeakAnnotation,PepLibPeakAnnotation> peakProcessor)
PeptideConsensusSpectrum	PeptideConsensusSpectrum.copy(PeakProcessorChain<PepLibPeakAnnotation> peakProcessorChain)

Constructors in org.expasy.mzjava.proteomics.ms.consensus with parameters of type PeptideConsensusSpectrum

Constructor and Description
PeptideConsensusPeakSink(PeptideConsensusSpectrum consensus, double peakFraction, int minPeakCount)
PeptideConsensusSpectrum(PeptideConsensusSpectrum src, PeakProcessor<PepLibPeakAnnotation,PepLibPeakAnnotation> peakProcessor) Copy constructor
PeptideConsensusSpectrum(PeptideConsensusSpectrum src, PeakProcessorChain<PepLibPeakAnnotation> peakProcessorChain)