org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Class LibrarySpectrumBuilder

java.lang.Object

org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt.LibrarySpectrumBuilder

public class LibrarySpectrumBuilder
extends Object

Version:

sqrt -1

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
LibrarySpectrumBuilder()

Method Summary

Methods

Modifier and Type	Method and Description
void	addMod(int index, String mod)
void	addMod(ModAttachment modAttachment, String mod)
void	addPeak(double mz, double intensity, String annotations)
void	addProteinAccessionNumber(String accessionNumber)
PeptideConsensusSpectrum	build(PeakList.Precision precision, ModificationResolver modificationResolver, AnnotationResolver annotationResolver, boolean acceptUnsortedSpectra)
void	clear()
void	ensureCapacity(int capacity)
void	setComment(String comment)
void	setPeptideSequence(String peptideSequence)
void	setPrecursorCharge(int precursorCharge)
void	setPrecursorMz(double precursorMz)
void	setStatus(PeptideConsensusSpectrum.Status status)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LibrarySpectrumBuilder

public LibrarySpectrumBuilder()

Method Detail

clear

public void clear()

addProteinAccessionNumber

public void addProteinAccessionNumber(String accessionNumber)

setPeptideSequence

public void setPeptideSequence(String peptideSequence)

addMod

public void addMod(int index,
          String mod)

addMod

public void addMod(ModAttachment modAttachment,
          String mod)

setStatus

public void setStatus(PeptideConsensusSpectrum.Status status)

setPrecursorMz

public void setPrecursorMz(double precursorMz)

setPrecursorCharge

public void setPrecursorCharge(int precursorCharge)

ensureCapacity

public void ensureCapacity(int capacity)

addPeak

public void addPeak(double mz,
           double intensity,
           String annotations)

setComment

public void setComment(String comment)

build

public PeptideConsensusSpectrum build(PeakList.Precision precision,
                             ModificationResolver modificationResolver,
                             AnnotationResolver annotationResolver,
                             boolean acceptUnsortedSpectra)