Uses of Class
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt.LibrarySpectrumBuilder

Packages that use LibrarySpectrumBuilder

Package	Description
org.expasy.mzjava.proteomics.io.ms.spectrum
org.expasy.mzjava.proteomics.io.ms.spectrum.msp
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Uses of LibrarySpectrumBuilder in org.expasy.mzjava.proteomics.io.ms.spectrum

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum with parameters of type LibrarySpectrumBuilder

Modifier and Type	Method and Description
protected boolean	MsLibReader.handlePeakLine(LibrarySpectrumBuilder builder, String line) Handle peak line, which is any line that starts with a digit
protected boolean	MsLibReader.handleTagLine(String tag, String value, LibrarySpectrumBuilder spectrumBuilder) Handle tag value line.
protected boolean	MsLibReader.handleUnknownLine(LibrarySpectrumBuilder spectrum, String line) Handle line that is not a comment, begin ion, tag, peak or end ion
protected boolean	MsLibReader.parseUnknownTag(String tag, String value, LibrarySpectrumBuilder spectrum) Called if there are any tags that are not handled by SptxtReader2 This is meant to be over ridden by subclasses that want to parse tags that the SptxtReader2 does not know about

Uses of LibrarySpectrumBuilder in org.expasy.mzjava.proteomics.io.ms.spectrum.msp

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.msp with parameters of type LibrarySpectrumBuilder

Modifier and Type	Method and Description
protected boolean	MspCommentParser.parseUnknownCommentTag(String tag, String value, LibrarySpectrumBuilder builder)

Uses of LibrarySpectrumBuilder in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt with parameters of type LibrarySpectrumBuilder

Modifier and Type	Method and Description
boolean	SpectraLibCommentParser.parseComment(String comment, LibrarySpectrumBuilder builder)
boolean	SpectraStCommentParser.parseComment(String comment, LibrarySpectrumBuilder builder)
protected boolean	SpectraStCommentParser.parseModsComment(String value, LibrarySpectrumBuilder builder)
protected boolean	SpectraStCommentParser.parseProteinComment(String value, LibrarySpectrumBuilder builder)
protected boolean	SpectraStCommentParser.parseUnknownCommentTag(String tag, String value, LibrarySpectrumBuilder builder)