org.expasy.mzjava.proteomics.avro.io

Class PeptideConsensusSpectrumWriter

java.lang.Object

org.expasy.mzjava.avro.io.AvroIO<AbstractAvroWriter>

org.expasy.mzjava.avro.io.AbstractAvroWriter<PL>

org.expasy.mzjava.avro.io.AbstractPeakListWriter<PeptideConsensusSpectrum>

org.expasy.mzjava.proteomics.avro.io.PeptideConsensusSpectrumWriter

All Implemented Interfaces:

AvroExternalizable, AvroWriter<PeptideConsensusSpectrum>

public class PeptideConsensusSpectrumWriter
extends AbstractPeakListWriter<PeptideConsensusSpectrum>

Version:

sqrt -1

Author:

Oliver Horlacher

Field Summary

Fields

Modifier and Type	Field and Description
protected PeakWriter	peakWriter
protected PeptideWriter	peptideWriter
protected RetentionTimeDiscreteWriter	rtWriter
protected UUIDWriter	uuidWriter

Constructor Summary

Constructors

Constructor and Description
PeptideConsensusSpectrumWriter()
PeptideConsensusSpectrumWriter(com.google.common.base.Optional<PeakList.Precision> precisionOverride)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	createRecordFields(List<org.apache.avro.Schema.Field> fields) Create a list containing the Schema.Fields for the fields that this class writes
Class	getObjectClass()
void	write(PeptideConsensusSpectrum spectrum, org.apache.avro.io.Encoder out) Write the value to the encoder

Methods inherited from class org.expasy.mzjava.avro.io.AbstractPeakListWriter

writePeakList

Methods inherited from class org.expasy.mzjava.avro.io.AbstractAvroWriter

getRecordName, getRecordNameSpace, writeArray, writeMap, writeMap, writeMap, writeOptional, writeStringArray, writeUnion, writeUnionArray

Methods inherited from class org.expasy.mzjava.avro.io.AvroIO

createEnumSchema, createSchema, createSchemaField, createUnionSchema, createUnionSchema, getRecordDoc, getUnion, registerUnion, rewriteNameSpace

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.expasy.mzjava.avro.io.AvroExternalizable

createSchema

Field Detail

peakWriter

protected final PeakWriter peakWriter

peptideWriter

protected final PeptideWriter peptideWriter

uuidWriter

protected final UUIDWriter uuidWriter

rtWriter

protected final RetentionTimeDiscreteWriter rtWriter

Constructor Detail

PeptideConsensusSpectrumWriter

public PeptideConsensusSpectrumWriter()

PeptideConsensusSpectrumWriter

public PeptideConsensusSpectrumWriter(com.google.common.base.Optional<PeakList.Precision> precisionOverride)

Method Detail

getObjectClass

public Class getObjectClass()

write

public void write(PeptideConsensusSpectrum spectrum,
         org.apache.avro.io.Encoder out)
           throws IOException

Description copied from interface: AvroWriter

Write the value to the encoder

Parameters:

spectrum - the value to write

out - the encoder

Throws:

IOException

createRecordFields

protected void createRecordFields(List<org.apache.avro.Schema.Field> fields)

Description copied from class: AvroIO

Create a list containing the Schema.Fields for the fields that this class writes

Overrides:

createRecordFields in class AbstractPeakListWriter<PeptideConsensusSpectrum>

Parameters:

fields - the list to add the fields to