Uses of Interface
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt.AnnotationResolver

Packages that use AnnotationResolver

Package	Description
org.expasy.mzjava.proteomics.io.ms.spectrum
org.expasy.mzjava.proteomics.io.ms.spectrum.msp
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Uses of AnnotationResolver in org.expasy.mzjava.proteomics.io.ms.spectrum

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum with parameters of type AnnotationResolver

Modifier and Type	Method and Description
MspReader.Builder	MspReader.Builder.useAnnotationResolver(AnnotationResolver annotationResolver)
SptxtReader.Builder	SptxtReader.Builder.useAnnotationResolver(AnnotationResolver annotationResolver)

Constructors in org.expasy.mzjava.proteomics.io.ms.spectrum with parameters of type AnnotationResolver

Constructor and Description
MsLibReader(Reader reader, URI spectraSource, PeakList.Precision precision, SpectraLibCommentParser commentParser, AnnotationResolver annotationResolver, PeakProcessorChain<PepLibPeakAnnotation> processorChain, ModificationResolver modResolver)

Uses of AnnotationResolver in org.expasy.mzjava.proteomics.io.ms.spectrum.msp

Classes in org.expasy.mzjava.proteomics.io.ms.spectrum.msp that implement AnnotationResolver

Modifier and Type	Class and Description
class	MspAnnotationResolver Parses annotations from Msp files.

Uses of AnnotationResolver in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Classes in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt that implement AnnotationResolver

Modifier and Type	Class and Description
class	SkipAnnotationResolver Annotation resolver that ignores annotations
class	SpectraStAnnotationResolver

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt with parameters of type AnnotationResolver

Modifier and Type	Method and Description
PeptideConsensusSpectrum	LibrarySpectrumBuilder.build(PeakList.Precision precision, ModificationResolver modificationResolver, AnnotationResolver annotationResolver, boolean acceptUnsortedSpectra)