org.expasy.mzjava.proteomics.io.ms.spectrum

Class MspReader.Builder

java.lang.Object

org.expasy.mzjava.proteomics.io.ms.spectrum.MspReader.Builder

Enclosing class:

MspReader

public static class MspReader.Builder
extends Object

Constructor Summary

Constructors

Constructor and Description
MspReader.Builder(Reader reader, URI source, PeakList.Precision precision)

Method Summary

Methods

Modifier and Type	Method and Description
MspReader.Builder	acceptUnsortedSpectra()
MspReader	build()
MspReader.Builder	useAnnotationResolver(AnnotationResolver annotationResolver)
MspReader.Builder	useModificationResolver(ModificationResolver modResolver)
MspReader.Builder	useMspAnnotationResolver()
MspReader.Builder	usePeakProcessorChain(PeakProcessorChain<PepLibPeakAnnotation> processorChain)
MspReader.Builder	useSkipAnnotationResolver()
MspReader.Builder	useSpectraLibCommentParser(SpectraLibCommentParser commentParser)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MspReader.Builder

public MspReader.Builder(Reader reader,
                 URI source,
                 PeakList.Precision precision)

Method Detail

acceptUnsortedSpectra

public MspReader.Builder acceptUnsortedSpectra()

useModificationResolver

public MspReader.Builder useModificationResolver(ModificationResolver modResolver)

usePeakProcessorChain

public MspReader.Builder usePeakProcessorChain(PeakProcessorChain<PepLibPeakAnnotation> processorChain)

useSkipAnnotationResolver

public MspReader.Builder useSkipAnnotationResolver()

useAnnotationResolver

public MspReader.Builder useAnnotationResolver(AnnotationResolver annotationResolver)

useMspAnnotationResolver

public MspReader.Builder useMspAnnotationResolver()

useSpectraLibCommentParser

public MspReader.Builder useSpectraLibCommentParser(SpectraLibCommentParser commentParser)

build

public MspReader build()
                throws IOException

Throws:

IOException