org.expasy.mzjava.proteomics.io.ms.spectrum

Class SptxtReader.Builder

java.lang.Object

org.expasy.mzjava.proteomics.io.ms.spectrum.SptxtReader.Builder

Enclosing class:

SptxtReader

public static class SptxtReader.Builder
extends Object

Constructor Summary

Constructors

Constructor and Description
SptxtReader.Builder(Reader reader, URI source, PeakList.Precision precision)

Method Summary

Methods

Modifier and Type	Method and Description
SptxtReader.Builder	acceptUnsortedSpectra()
SptxtReader	build()
SptxtReader.Builder	useAnnotationResolver(AnnotationResolver annotationResolver)
SptxtReader.Builder	useModificationResolver(ModificationResolver modResolver)
SptxtReader.Builder	usePeakProcessorChain(PeakProcessorChain<PepLibPeakAnnotation> processorChain)
SptxtReader.Builder	useSkipAnnotationResolver()
SptxtReader.Builder	useSpectraLibCommentParser(SpectraLibCommentParser commentParser)
SptxtReader.Builder	useSpectraStAnnotationResolver()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SptxtReader.Builder

public SptxtReader.Builder(Reader reader,
                   URI source,
                   PeakList.Precision precision)

Method Detail

acceptUnsortedSpectra

public SptxtReader.Builder acceptUnsortedSpectra()

useModificationResolver

public SptxtReader.Builder useModificationResolver(ModificationResolver modResolver)

usePeakProcessorChain

public SptxtReader.Builder usePeakProcessorChain(PeakProcessorChain<PepLibPeakAnnotation> processorChain)

useSkipAnnotationResolver

public SptxtReader.Builder useSkipAnnotationResolver()

useAnnotationResolver

public SptxtReader.Builder useAnnotationResolver(AnnotationResolver annotationResolver)

useSpectraStAnnotationResolver

public SptxtReader.Builder useSpectraStAnnotationResolver()

useSpectraLibCommentParser

public SptxtReader.Builder useSpectraLibCommentParser(SpectraLibCommentParser commentParser)

build

public SptxtReader build()
                  throws IOException

Throws:

IOException