Uses of Interface
org.expasy.mzjava.proteomics.io.ms.ident.PSMReaderCallback

Packages that use PSMReaderCallback

Package	Description
org.expasy.mzjava.proteomics.io.ms.ident

Uses of PSMReaderCallback in org.expasy.mzjava.proteomics.io.ms.ident

Methods in org.expasy.mzjava.proteomics.io.ms.ident with parameters of type PSMReaderCallback

Modifier and Type	Method and Description
void	MzIdentMlReader.parse(File file, PSMReaderCallback callback)
void	PsmReader.parse(File file, PSMReaderCallback callback) Parse file and call back PSMReaderCallback on each found PSM
void	MODaPsmReader.parse(File file, PSMReaderCallback callback)
void	PepXmlReader.parse(File file, PSMReaderCallback callback)
void	AbstractPsmCsvReader.parse(File file, PSMReaderCallback callback)
void	AbstractPsmCsvReader.parse(File file, String delimiter, PSMReaderCallback callback)
void	MzIdentMlReader.parse(InputSource is, PSMReaderCallback callback)
void	MzIdentMlReader.parse(InputStream inputStream, PSMReaderCallback callback)
void	PsmReader.parse(InputStream inputStream, PSMReaderCallback callback) Parse inputStream and call back PSMReaderCallback on each found PSM
void	MODaPsmReader.parse(InputStream inputStream, PSMReaderCallback callback)
void	PepXmlReader.parse(InputStream inputStream, PSMReaderCallback callback)
void	AbstractPsmCsvReader.parse(InputStream inputStream, PSMReaderCallback callback)
void	MzIdentMlReader.parse(Reader reader, PSMReaderCallback callback)
void	PsmReader.parse(Reader reader, PSMReaderCallback callback) Parse reader and call back PSMReaderCallback on each found PSM
void	MODaPsmReader.parse(Reader reader, PSMReaderCallback callback)
void	PepXmlReader.parse(Reader reader, PSMReaderCallback callback)
void	AbstractPsmCsvReader.parse(Reader reader, PSMReaderCallback callback)
protected void	PepXmlReader.parse(XMLStreamReader xsr, com.google.common.base.Optional<String> xmlFileName, PSMReaderCallback callback)
protected void	PepXmlReader.processSearchHit(PSMReaderCallback callback, SpectrumIdentifier identifier, MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit searchHit)
protected void	MODaPsmReader.submit(PSMReaderCallback callback)