Uses of Class
org.expasy.mzjava.glycomics.mol.GlycanNode

Packages that use GlycanNode

Package	Description
org.expasy.mzjava.glycomics.mol

Uses of GlycanNode in org.expasy.mzjava.glycomics.mol

Classes in org.expasy.mzjava.glycomics.mol with type parameters of type GlycanNode

Modifier and Type	Class and Description
class	SEdge<N extends GlycanNode,L extends Linkage>

Subclasses of GlycanNode in org.expasy.mzjava.glycomics.mol

Modifier and Type	Class and Description
class	Monosaccharide
class	Substituent

Fields in org.expasy.mzjava.glycomics.mol with type parameters of type GlycanNode

Modifier and Type	Field and Description
protected List<GlycanNode>	SaccharideGraph.nodes
protected gnu.trove.map.TObjectIntMap<GlycanNode>	SaccharideGraph.postOrder
protected gnu.trove.map.TObjectIntMap<GlycanNode>	SaccharideGraph.preOrder

Methods in org.expasy.mzjava.glycomics.mol with type parameters of type GlycanNode

Modifier and Type	Method and Description
<A extends GlycanNode> GlycanNode	SaccharideGraph.getParent(A child) Calculate the parent of a node.

Methods in org.expasy.mzjava.glycomics.mol that return GlycanNode

Modifier and Type	Method and Description
GlycanNode	SaccharideGraph.getNode(int nodeId) Returns the nodeId'th node that was added to this SaccharideGraph.
GlycanNode	SaccharideGraph.AbstractBuilder.getNode(int nodeId) Return the nodeId'th node that was added
<A extends GlycanNode> GlycanNode	SaccharideGraph.getParent(A child) Calculate the parent of a node.

Methods in org.expasy.mzjava.glycomics.mol that return types with arguments of type GlycanNode

Modifier and Type	Method and Description
NodeSet<GlycanNode>	SaccharideGraph.getChildren(Monosaccharide parent) Returns a the children of parent

Methods in org.expasy.mzjava.glycomics.mol with parameters of type GlycanNode

Modifier and Type	Method and Description
protected boolean	SaccharideGraph.containsNode(GlycanNode node) This method check if a glycan contains a specific node.
com.google.common.base.Optional<GlycosidicLinkage>	SaccharideGraph.getGlycoLinkage(GlycanNode parentNode, GlycanNode childNode) Return the linkage between parentNode and childNode
int	SaccharideGraph.AbstractBuilder.getId(GlycanNode node) Return the id of the node
com.google.common.base.Optional<SubstituentLinkage>	SaccharideGraph.getSubstituentLinkage(GlycanNode parentNode, GlycanNode childNode) Return the linkage between parentNode and childNode
protected void	SaccharideGraph.populatePrePostOrder(GlycanNode node, Counter counter) Populate the pre and post order table

Constructors in org.expasy.mzjava.glycomics.mol with parameters of type GlycanNode

Constructor and Description
GlycanNode(GlycanNode src)

Constructor parameters in org.expasy.mzjava.glycomics.mol with type arguments of type GlycanNode

Constructor and Description

GlycanFragment(Monosaccharide root, FragmentType fragmentType, List<GlycanNode> nodes, List<SEdge> edges, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Monosaccharide,org.expasy.mzjava.glycomics.mol.GlycosidicEdge> monosaccharideEdgeMultimap, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Substituent,org.expasy.mzjava.glycomics.mol.SubstituentEdge> substituentEdgeMultimap, Composition endComposition, Map<CleavedMonosaccharide,IonType> monosaccharideIonTypeMap, Map<SEdge,IonType> edgeIonTypeMap)