Uses of Class
org.expasy.mzjava.glycomics.mol.GlycanFragment

Packages that use GlycanFragment

Package	Description
org.expasy.mzjava.glycomics.mol
org.expasy.mzjava.glycomics.ms.fragment
org.expasy.mzjava.glycomics.ms.spectrum

Uses of GlycanFragment in org.expasy.mzjava.glycomics.mol

Methods in org.expasy.mzjava.glycomics.mol that return GlycanFragment

Modifier and Type	Method and Description
GlycanFragment	GlycanFragment.Builder.build() Build the Glycosidic Fragments Fragment.

Methods in org.expasy.mzjava.glycomics.mol that return types with arguments of type GlycanFragment

Modifier and Type	Method and Description
List<GlycanFragment>	Glycan.getFragment(CutDescriptor cutDescriptor)

Uses of GlycanFragment in org.expasy.mzjava.glycomics.ms.fragment

Methods in org.expasy.mzjava.glycomics.ms.fragment with parameters of type GlycanFragment

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	GlycanPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<GlycanFragAnnotation>>	GlycanFragmentPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.

Method parameters in org.expasy.mzjava.glycomics.ms.fragment with type arguments of type GlycanFragment

Modifier and Type	Method and Description
GlycanSpectrum	GlycanFragmenter.fragment(Glycan glycan, int precursorCharge, List<GlycanFragment> fragmentList, int[] fragmentCharges) Generate a GlycanSpectrum from the fragment in input.

Uses of GlycanFragment in org.expasy.mzjava.glycomics.ms.spectrum

Methods in org.expasy.mzjava.glycomics.ms.spectrum that return GlycanFragment

Modifier and Type	Method and Description
GlycanFragment	GlycanFragAnnotation.getFragment() Return the glycan fragment associated with this annotation

Constructors in org.expasy.mzjava.glycomics.ms.spectrum with parameters of type GlycanFragment

Constructor and Description
GlycanFragAnnotation.FragBuilder(int charge, GlycanFragment fragment) Construct a new FragBuilder
GlycanFragAnnotation(int charge, GlycanFragment fragment) Construct a GlycanFragAnnotation
GlycanFragAnnotation(int charge, GlycanFragment fragment, Composition isotopeComposition, Mass neutralLoss)