org.expasy.mzjava.glycomics.ms.spectrum

Class GlycanFragAnnotation.FragBuilder

java.lang.Object

org.expasy.mzjava.glycomics.ms.spectrum.GlycanFragAnnotation.FragBuilder

Enclosing class:

GlycanFragAnnotation

public static class GlycanFragAnnotation.FragBuilder
extends Object

GlycanFragAnnotation Builder

Constructor Summary

Constructors

Constructor and Description
GlycanFragAnnotation.FragBuilder(GlycanFragAnnotation src) Copy constructor
GlycanFragAnnotation.FragBuilder(int charge, GlycanFragment fragment) Construct a new FragBuilder

Method Summary

Methods

Modifier and Type	Method and Description
GlycanFragAnnotation.FragBuilder	addC13(int count) Add count C13 isotopes
GlycanFragAnnotation.FragBuilder	addH2(int count) Add count H2 isotpes
GlycanFragAnnotation.FragBuilder	addIsotope(Atom isotope) Add the isotope
GlycanFragAnnotation.FragBuilder	addIsotopeComposition(Composition isotopeComposition) Add all the atoms from isotopeComposition
GlycanFragAnnotation	build() Build the CrossRingFragAnnotation annotation.
GlycanFragAnnotation.FragBuilder	setNeutralLoss(Mass neutralLoss) Set the neutral loss

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GlycanFragAnnotation.FragBuilder

public GlycanFragAnnotation.FragBuilder(int charge,
                                GlycanFragment fragment)

Construct a new FragBuilder

Parameters:

charge - the charge

fragment - the glycan fragment

GlycanFragAnnotation.FragBuilder

public GlycanFragAnnotation.FragBuilder(GlycanFragAnnotation src)

Copy constructor

Parameters:

src - the GlycanFragAnnotation from which to copy the values

Method Detail

setNeutralLoss

public final GlycanFragAnnotation.FragBuilder setNeutralLoss(Mass neutralLoss)

Set the neutral loss

Parameters:

neutralLoss - the neutral loss

Returns:

this builder

addC13

public final GlycanFragAnnotation.FragBuilder addC13(int count)

Add count C13 isotopes

Parameters:

count - the number of C13 isotopes

Returns:

this builder

addH2

public final GlycanFragAnnotation.FragBuilder addH2(int count)

Add count H2 isotpes

Parameters:

count - the number of H2 to add

Returns:

this builder

addIsotope

public final GlycanFragAnnotation.FragBuilder addIsotope(Atom isotope)

Add the isotope

Parameters:

isotope - the isotope to add

Returns:

this builder

addIsotopeComposition

public final GlycanFragAnnotation.FragBuilder addIsotopeComposition(Composition isotopeComposition)

Add all the atoms from isotopeComposition

Parameters:

isotopeComposition - the atoms to add

Returns:

this builder

build

public final GlycanFragAnnotation build()

Build the CrossRingFragAnnotation annotation.

Returns:

the new CrossRingFragAnnotation