Uses of Class
org.expasy.mzjava.core.mol.Mass

Packages that use Mass

Package	Description
org.expasy.mzjava.core.mol
org.expasy.mzjava.glycomics.ms.spectrum
org.expasy.mzjava.proteomics.io.ms.spectrum.msp
org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt
org.expasy.mzjava.proteomics.mol.modification
org.expasy.mzjava.proteomics.ms.fragment
org.expasy.mzjava.proteomics.ms.spectrum

Uses of Mass in org.expasy.mzjava.core.mol

Subclasses of Mass in org.expasy.mzjava.core.mol

Modifier and Type	Class and Description
class	Composition A collection of atoms and charge
class	NumericMass

Fields in org.expasy.mzjava.core.mol declared as Mass

Modifier and Type	Field and Description
static Mass	Mass.ZERO

Uses of Mass in org.expasy.mzjava.glycomics.ms.spectrum

Methods in org.expasy.mzjava.glycomics.ms.spectrum that return Mass

Modifier and Type	Method and Description
Mass	GlycanFragAnnotation.getNeutralLoss() Return the mass shift that is associated with this annotation

Methods in org.expasy.mzjava.glycomics.ms.spectrum with parameters of type Mass

Modifier and Type	Method and Description
GlycanFragAnnotation.FragBuilder	GlycanFragAnnotation.FragBuilder.setNeutralLoss(Mass neutralLoss) Set the neutral loss

Constructors in org.expasy.mzjava.glycomics.ms.spectrum with parameters of type Mass

Constructor and Description
GlycanFragAnnotation(int charge, GlycanFragment fragment, Composition isotopeComposition, Mass neutralLoss)

Uses of Mass in org.expasy.mzjava.proteomics.io.ms.spectrum.msp

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.msp that return Mass

Modifier and Type	Method and Description
protected Mass	MspAnnotationResolver.resolveComposition(String neutralLossGroup)

Uses of Mass in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt

Methods in org.expasy.mzjava.proteomics.io.ms.spectrum.sptxt that return Mass

Modifier and Type	Method and Description
protected Mass	SpectraStAnnotationResolver.resolveComposition(String neutralLossGroup)

Uses of Mass in org.expasy.mzjava.proteomics.mol.modification

Subclasses of Mass in org.expasy.mzjava.proteomics.mol.modification

Modifier and Type	Class and Description
class	NeutralLoss

Methods in org.expasy.mzjava.proteomics.mol.modification that return Mass

Modifier and Type	Method and Description
Mass	Modification.getMass()

Constructors in org.expasy.mzjava.proteomics.mol.modification with parameters of type Mass

Constructor and Description
Modification(String label, Mass mass)

Uses of Mass in org.expasy.mzjava.proteomics.ms.fragment

Methods in org.expasy.mzjava.proteomics.ms.fragment with parameters of type Mass

Modifier and Type	Method and Description
static PeptideNeutralLossPeakGenerator	PeptideNeutralLossPeakGenerator.newModificationLossGenerator(Mass loss, Set<AminoAcid> aminoAcids, Set<Modification> modifications, Set<ModAttachment> modAttachments, Set<IonType> ionTypes, double peakIntensity)

Constructors in org.expasy.mzjava.proteomics.ms.fragment with parameters of type Mass

Constructor and Description
PeptideNeutralLossPeakGenerator(Mass massShift, com.google.common.base.Predicate<PeptideFragment> modificationPredicate, Set<IonType> ionTypes, double peakIntensity)
PeptideNeutralLossPeakGenerator(Mass massShift, Set<AminoAcid> affectedAA, Set<IonType> ionTypes, double peakIntensity)

Uses of Mass in org.expasy.mzjava.proteomics.ms.spectrum

Methods in org.expasy.mzjava.proteomics.ms.spectrum that return Mass

Modifier and Type	Method and Description
Mass	PepFragAnnotation.getNeutralLoss() Return the mass shift that is associated with this annotation

Methods in org.expasy.mzjava.proteomics.ms.spectrum with parameters of type Mass

Modifier and Type	Method and Description
PepFragAnnotation.Builder	PepFragAnnotation.Builder.setNeutralLoss(Mass neutralLoss) Set the neutral loss