| Modifier and Type | Class and Description |
|---|---|
class |
Composition
A collection of atoms and charge
|
class |
NumericMass |
| Modifier and Type | Field and Description |
|---|---|
static Mass |
Mass.ZERO |
| Modifier and Type | Method and Description |
|---|---|
Mass |
GlycanFragAnnotation.getNeutralLoss()
Return the mass shift that is associated with this annotation
|
| Modifier and Type | Method and Description |
|---|---|
GlycanFragAnnotation.FragBuilder |
GlycanFragAnnotation.FragBuilder.setNeutralLoss(Mass neutralLoss)
Set the neutral loss
|
| Constructor and Description |
|---|
GlycanFragAnnotation(int charge,
GlycanFragment fragment,
Composition isotopeComposition,
Mass neutralLoss) |
| Modifier and Type | Method and Description |
|---|---|
protected Mass |
MspAnnotationResolver.resolveComposition(String neutralLossGroup) |
| Modifier and Type | Method and Description |
|---|---|
protected Mass |
SpectraStAnnotationResolver.resolveComposition(String neutralLossGroup) |
| Modifier and Type | Class and Description |
|---|---|
class |
NeutralLoss |
| Modifier and Type | Method and Description |
|---|---|
Mass |
Modification.getMass() |
| Constructor and Description |
|---|
Modification(String label,
Mass mass) |
| Modifier and Type | Method and Description |
|---|---|
static PeptideNeutralLossPeakGenerator |
PeptideNeutralLossPeakGenerator.newModificationLossGenerator(Mass loss,
Set<AminoAcid> aminoAcids,
Set<Modification> modifications,
Set<ModAttachment> modAttachments,
Set<IonType> ionTypes,
double peakIntensity) |
| Constructor and Description |
|---|
PeptideNeutralLossPeakGenerator(Mass massShift,
com.google.common.base.Predicate<PeptideFragment> modificationPredicate,
Set<IonType> ionTypes,
double peakIntensity) |
PeptideNeutralLossPeakGenerator(Mass massShift,
Set<AminoAcid> affectedAA,
Set<IonType> ionTypes,
double peakIntensity) |
| Modifier and Type | Method and Description |
|---|---|
Mass |
PepFragAnnotation.getNeutralLoss()
Return the mass shift that is associated with this annotation
|
| Modifier and Type | Method and Description |
|---|---|
PepFragAnnotation.Builder |
PepFragAnnotation.Builder.setNeutralLoss(Mass neutralLoss)
Set the neutral loss
|
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