Uses of Class
org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117.MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Packages that use MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Package	Description
org.expasy.mzjava.proteomics.io.ms.ident
org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117

Uses of MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein in org.expasy.mzjava.proteomics.io.ms.ident

Methods in org.expasy.mzjava.proteomics.io.ms.ident with parameters of type MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Modifier and Type	Method and Description
protected PeptideProteinMatch	PepXmlReader.newProteinMatch(MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein protein)

Uses of MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein in org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117

Fields in org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117 with type parameters of type MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Modifier and Type	Field and Description
protected List<MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein>	MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.alternativeProtein

Methods in org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117 that return MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Modifier and Type	Method and Description
MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein	ObjectFactory.createMsmsPipelineAnalysisMsmsRunSummarySpectrumQuerySearchResultSearchHitAlternativeProtein() Create an instance of MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Methods in org.expasy.mzjava.proteomics.io.ms.ident.pepxml.v117 that return types with arguments of type MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein

Modifier and Type	Method and Description
List<MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein>	MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.getAlternativeProtein() Gets the value of the alternativeProtein property.