Uses of Class
org.expasy.mzjava.glycomics.ms.spectrum.GlycanFragAnnotation

Packages that use GlycanFragAnnotation

Package	Description
org.expasy.mzjava.glycomics.ms.fragment
org.expasy.mzjava.glycomics.ms.spectrum

Uses of GlycanFragAnnotation in org.expasy.mzjava.glycomics.ms.fragment

Methods in org.expasy.mzjava.glycomics.ms.fragment that return types with arguments of type GlycanFragAnnotation

Modifier and Type	Method and Description
List<AnnotatedPeak<GlycanFragAnnotation>>	GlycanFragmentPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.

Method parameters in org.expasy.mzjava.glycomics.ms.fragment with type arguments of type GlycanFragAnnotation

Modifier and Type	Method and Description
List<AnnotatedPeak<A>>	GlycanPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.
List<AnnotatedPeak<GlycanFragAnnotation>>	GlycanFragmentPeakGenerator.generatePeaks(Glycan precursor, GlycanFragment fragment, int[] charges, List<AnnotatedPeak<GlycanFragAnnotation>> annotatedPeaks) Generate peaks that are observed for the fragment at the supplied charge states.

Constructor parameters in org.expasy.mzjava.glycomics.ms.fragment with type arguments of type GlycanFragAnnotation

Constructor and Description
GlycanFragmenter(List<GlycanPeakGenerator<GlycanFragAnnotation>> peakGeneratorList, PeakList.Precision precision, int maxGlycosidicCuts, int maxCrossringCuts) Constructs a glycan fragmenter that generates peaks using the supplied peak generators.

Uses of GlycanFragAnnotation in org.expasy.mzjava.glycomics.ms.spectrum

Methods in org.expasy.mzjava.glycomics.ms.spectrum that return GlycanFragAnnotation

Modifier and Type	Method and Description
GlycanFragAnnotation	GlycanFragAnnotation.FragBuilder.build() Build the CrossRingFragAnnotation annotation.
GlycanFragAnnotation	GlycanFragAnnotation.copy()

Method parameters in org.expasy.mzjava.glycomics.ms.spectrum with type arguments of type GlycanFragAnnotation

Modifier and Type	Method and Description
GlycanSpectrum	GlycanSpectrum.copy(PeakProcessor<GlycanFragAnnotation,GlycanFragAnnotation> peakProcessor)
GlycanSpectrum	GlycanSpectrum.copy(PeakProcessor<GlycanFragAnnotation,GlycanFragAnnotation> peakProcessor)
GlycanSpectrum	GlycanSpectrum.copy(PeakProcessorChain<GlycanFragAnnotation> peakProcessorChain)

Constructors in org.expasy.mzjava.glycomics.ms.spectrum with parameters of type GlycanFragAnnotation

Constructor and Description
GlycanFragAnnotation.FragBuilder(GlycanFragAnnotation src) Copy constructor
GlycanFragAnnotation(GlycanFragAnnotation src) Copy constructor

Constructor parameters in org.expasy.mzjava.glycomics.ms.spectrum with type arguments of type GlycanFragAnnotation

Constructor and Description
GlycanSpectrum(GlycanSpectrum src, PeakProcessor<GlycanFragAnnotation,GlycanFragAnnotation> peakProcessor) Copy constructor
GlycanSpectrum(GlycanSpectrum src, PeakProcessor<GlycanFragAnnotation,GlycanFragAnnotation> peakProcessor) Copy constructor
GlycanSpectrum(GlycanSpectrum src, PeakProcessorChain<GlycanFragAnnotation> peakProcessorChain) Copy constructor
GlycanSpectrum(Spectrum<GlycanFragAnnotation> src, Glycan glycan, int charge) Constructor for GlycanSpectrum.