org.expasy.mzjava.glycomics.mol

Class DefaultSubstituentLookup

java.lang.Object

org.expasy.mzjava.glycomics.mol.DefaultSubstituentLookup

All Implemented Interfaces:

SubstituentLookup

public class DefaultSubstituentLookup
extends Object
implements SubstituentLookup

Version:

sqrt -1

Author:

Davide Alocci

Field Summary

Fields

Modifier and Type	Field and Description
static String	PROPERTY_SUBSTITUENT_LOOKUP

Constructor Summary

Constructors

Constructor and Description
DefaultSubstituentLookup()

Method Summary

Methods

Modifier and Type	Method and Description
Substituent	getNew(String name) Search for a substituent with the input name the list of known substituents.
protected Map<String,Substituent>	parse(Reader in, Map<String,Substituent> substituentLookupMap) Parser for the Substituent Lookup file
List<Substituent>	values() Return a list of the substituents specified in Substituent Lookup file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROPERTY_SUBSTITUENT_LOOKUP

public static final String PROPERTY_SUBSTITUENT_LOOKUP

See Also:

Constant Field Values

Constructor Detail

DefaultSubstituentLookup

public DefaultSubstituentLookup()

Method Detail

getNew

public final Substituent getNew(String name)

Search for a substituent with the input name the list of known substituents.

The method throw an IllegalStateException if there is no substituent with the input name in the list.

Specified by:

getNew in interface SubstituentLookup

Parameters:

name - the name of the substituent

Returns:

A substituent object with the specified name.

values

public final List<Substituent> values()

Return a list of the substituents specified in Substituent Lookup file.

Specified by:

values in interface SubstituentLookup

Returns:

A list of the known substituents

parse

protected Map<String,Substituent> parse(Reader in,
                            Map<String,Substituent> substituentLookupMap)

Parser for the Substituent Lookup file

Returns:

A map that has the name as Key and the Substituent as Value