org.expasy.mzjava.glycomics.mol

Class DefaultMonosaccharideLookup

java.lang.Object

org.expasy.mzjava.glycomics.mol.DefaultMonosaccharideLookup

All Implemented Interfaces:

MonosaccharideLookup

public class DefaultMonosaccharideLookup
extends Object
implements MonosaccharideLookup

Version:

sqrt -1

Author:

Davide Alocci

Field Summary

Fields

Modifier and Type	Field and Description
static String	PROPERTY_MONOSACCHARIDE_LOOKUP

Constructor Summary

Constructors

Constructor and Description
DefaultMonosaccharideLookup()

Method Summary

Methods

Modifier and Type	Method and Description
Monosaccharide	getNew(String name) Search for a monosaccharide with the input name the list of known monosaccharides.
protected Map<String,Monosaccharide>	parse(Reader in, Map<String,Monosaccharide> monosaccharideLookupMap) Parser for the Monosaccharide Lookup file
List<Monosaccharide>	values() Return a list of the monosaccharides specified in Monosaccharide Lookup file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROPERTY_MONOSACCHARIDE_LOOKUP

public static final String PROPERTY_MONOSACCHARIDE_LOOKUP

See Also:

Constant Field Values

Constructor Detail

DefaultMonosaccharideLookup

public DefaultMonosaccharideLookup()

Method Detail

getNew

public final Monosaccharide getNew(String name)

Search for a monosaccharide with the input name the list of known monosaccharides.

The method throw an IllegalStateException if there is no monosaccharide with the input name in the list.

Specified by:

getNew in interface MonosaccharideLookup

Parameters:

name - the name of the monosaccharide

Returns:

A monosaccharide object with the specified name.

values

public final List<Monosaccharide> values()

Return a list of the monosaccharides specified in Monosaccharide Lookup file.

Specified by:

values in interface MonosaccharideLookup

Returns:

A list of the known monosaccharides

parse

protected Map<String,Monosaccharide> parse(Reader in,
                               Map<String,Monosaccharide> monosaccharideLookupMap)

Parser for the Monosaccharide Lookup file

Returns:

A map that has the name as Key and the Monosaccharide as Value