Uses of Class
org.expasy.mzjava.avro.io.AbstractAvroReader

Packages that use AbstractAvroReader

Package	Description
org.expasy.mzjava.avro.io
org.expasy.mzjava.hadoop.io
org.expasy.mzjava.proteomics.avro.io

Uses of AbstractAvroReader in org.expasy.mzjava.avro.io

Subclasses of AbstractAvroReader in org.expasy.mzjava.avro.io

Modifier and Type	Class and Description
class	AbstractPeakListReader<A extends PeakAnnotation,PL extends PeakList<A>>
class	CompositionReader
class	LibPeakAnnotationReader
class	MsnSpectrumReader
class	NumericMassReader
class	PeakListReader
class	PeakReader
class	RetentionTimeDiscreteReader
class	RetentionTimeIntervalReader
class	RetentionTimeListReader
class	ScanNumberDiscreteReader
class	ScanNumberIntervalReader
class	ScanNumberListReader
class	UUIDReader

Methods in org.expasy.mzjava.avro.io with parameters of type AbstractAvroReader

Modifier and Type	Method and Description
protected <C extends Collection<E>,E> C	AbstractAvroReader.readArray(AbstractAvroReader<E> reader, C collection, org.apache.avro.io.Decoder in) Read an array that contains records into collection
protected <K,V> Map<K,V>	AbstractAvroReader.readMap(com.google.common.base.Function<String,K> keyFunction, AbstractAvroReader<V> reader, org.apache.avro.io.Decoder in)
protected <C> com.google.common.base.Optional<C>	AbstractAvroReader.readOptional(AbstractAvroReader<C> reader, org.apache.avro.io.Decoder in) Read an union of C and null and return a Optional.of() or Optional.absent()

Constructors in org.expasy.mzjava.avro.io with parameters of type AbstractAvroReader

Constructor and Description
AbstractPeakListReader(AbstractAvroReader<? extends A>[] annotationReaders, com.google.common.base.Optional<PeakList.Precision> precisionOverride, List<PeakProcessor<A,A>> peakProcessorList)
MsnSpectrumMetaDataReader(AbstractAvroReader<? extends MsnSpectrum> reader)
MsnSpectrumReader(AbstractAvroReader<? extends PeakAnnotation>[] annotationReaders)
MsnSpectrumReader(AbstractAvroReader<? extends PeakAnnotation>[] annotationReaders, com.google.common.base.Optional<PeakList.Precision> precisionOverride, List<PeakProcessor<PeakAnnotation,PeakAnnotation>> peakProcessors)
MsnSpectrumReader(AbstractAvroReader<PeakAnnotation> annotationReader, com.google.common.base.Optional<PeakList.Precision> precisionOverride, List<PeakProcessor<PeakAnnotation,PeakAnnotation>> peakProcessors)

Uses of AbstractAvroReader in org.expasy.mzjava.hadoop.io

Constructors in org.expasy.mzjava.hadoop.io with parameters of type AbstractAvroReader

Constructor and Description
AbstractPeakListValue(AbstractPeakListWriter<PL> writer, AbstractAvroReader<PL> reader)

Uses of AbstractAvroReader in org.expasy.mzjava.proteomics.avro.io

Subclasses of AbstractAvroReader in org.expasy.mzjava.proteomics.avro.io

Modifier and Type	Class and Description
class	AbstractAminoAcidSequenceReader<O extends AminoAcidSequence>
class	ModificationReader
class	PepFragAnnotationReader
class	PepLibPeakAnnotationReader
class	PeptideConsensusSpectrumReader
class	PeptideFragmentReader
class	PeptideReader
class	PeptideSpectrumReader