org.expasy.mzjava.proteomics.avro.io

Class AbstractAminoAcidSequenceReader<O extends AminoAcidSequence>

java.lang.Object

org.expasy.mzjava.avro.io.AvroIO<AbstractAvroReader>

org.expasy.mzjava.avro.io.AbstractAvroReader<O>

org.expasy.mzjava.proteomics.avro.io.AbstractAminoAcidSequenceReader<O>

All Implemented Interfaces:

AvroExternalizable, AvroReader<O>

Direct Known Subclasses:

PeptideFragmentReader, PeptideReader

public abstract class AbstractAminoAcidSequenceReader<O extends AminoAcidSequence>
extends AbstractAvroReader<O>

Version:

sqrt -1

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
AbstractAminoAcidSequenceReader()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addSequenceFields(List<org.apache.avro.Schema.Field> fields)
void	readSequence(PeptideBuilder builder, org.apache.avro.io.Decoder in)

Methods inherited from class org.expasy.mzjava.avro.io.AbstractAvroReader

getRecordName, getRecordNameSpace, readArray, readMap, readMap, readMap, readOptional, readStringArray, readUnion, readUnionArray

Methods inherited from class org.expasy.mzjava.avro.io.AvroIO

createEnumSchema, createRecordFields, createSchema, createSchemaField, createUnionSchema, createUnionSchema, getRecordDoc, getUnion, registerUnion, rewriteNameSpace

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.expasy.mzjava.avro.io.AvroReader

read

Methods inherited from interface org.expasy.mzjava.avro.io.AvroExternalizable

createSchema, getObjectClass

Constructor Detail

AbstractAminoAcidSequenceReader

public AbstractAminoAcidSequenceReader()

Method Detail

readSequence

public void readSequence(PeptideBuilder builder,
                org.apache.avro.io.Decoder in)
                  throws IOException

Throws:

IOException

addSequenceFields

protected void addSequenceFields(List<org.apache.avro.Schema.Field> fields)