org.expasy.mzjava.proteomics.avro.io

Class AbstractAminoAcidSequenceWriter<O extends AminoAcidSequence>

java.lang.Object

org.expasy.mzjava.avro.io.AvroIO<AbstractAvroWriter>

org.expasy.mzjava.avro.io.AbstractAvroWriter<O>

org.expasy.mzjava.proteomics.avro.io.AbstractAminoAcidSequenceWriter<O>

All Implemented Interfaces:

AvroExternalizable, AvroWriter<O>

Direct Known Subclasses:

PeptideFragmentWriter, PeptideWriter

public abstract class AbstractAminoAcidSequenceWriter<O extends AminoAcidSequence>
extends AbstractAvroWriter<O>

Version:

sqrt -1

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
AbstractAminoAcidSequenceWriter()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addSequenceFields(List<org.apache.avro.Schema.Field> fields)
void	writeSequence(AminoAcidSequence sequence, org.apache.avro.io.Encoder out)

Methods inherited from class org.expasy.mzjava.avro.io.AbstractAvroWriter

getRecordName, getRecordNameSpace, writeArray, writeMap, writeMap, writeMap, writeOptional, writeStringArray, writeUnion, writeUnionArray

Methods inherited from class org.expasy.mzjava.avro.io.AvroIO

createEnumSchema, createRecordFields, createSchema, createSchemaField, createUnionSchema, createUnionSchema, getRecordDoc, getUnion, registerUnion, rewriteNameSpace

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.expasy.mzjava.avro.io.AvroWriter

write

Methods inherited from interface org.expasy.mzjava.avro.io.AvroExternalizable

createSchema, getObjectClass

Constructor Detail

AbstractAminoAcidSequenceWriter

public AbstractAminoAcidSequenceWriter()

Method Detail

writeSequence

public void writeSequence(AminoAcidSequence sequence,
                 org.apache.avro.io.Encoder out)
                   throws IOException

Throws:

IOException

addSequenceFields

protected void addSequenceFields(List<org.apache.avro.Schema.Field> fields)