Uses of Class
org.expasy.mzjava.proteomics.ms.ident.PeptideProteinMatch

Packages that use PeptideProteinMatch

Package	Description
org.expasy.mzjava.proteomics.io.ms.ident
org.expasy.mzjava.proteomics.ms.ident

Uses of PeptideProteinMatch in org.expasy.mzjava.proteomics.io.ms.ident

Methods in org.expasy.mzjava.proteomics.io.ms.ident that return PeptideProteinMatch

Modifier and Type	Method and Description
protected PeptideProteinMatch	PepXmlReader.newProteinMatch(MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit.AlternativeProtein protein)
protected PeptideProteinMatch	PepXmlReader.newProteinMatch(MsmsPipelineAnalysis.MsmsRunSummary.SpectrumQuery.SearchResult.SearchHit searchHit)

Uses of PeptideProteinMatch in org.expasy.mzjava.proteomics.ms.ident

Methods in org.expasy.mzjava.proteomics.ms.ident that return types with arguments of type PeptideProteinMatch

Modifier and Type	Method and Description
List<PeptideProteinMatch>	PeptideMatch.getProteinMatches() Return a reference to the protein accession list

Methods in org.expasy.mzjava.proteomics.ms.ident with parameters of type PeptideProteinMatch

Modifier and Type	Method and Description
void	PeptideMatch.addProteinMatch(PeptideProteinMatch proteinMatch) Add a protein match to this PeptideMatch

Method parameters in org.expasy.mzjava.proteomics.ms.ident with type arguments of type PeptideProteinMatch

Modifier and Type	Method and Description
void	PeptideMatch.addProteinMatches(Collection<PeptideProteinMatch> matchCollection) Add all the accessions in proteinAC to this PeptideMatch