Uses of Class
org.expasy.mzjava.proteomics.ms.dbsearch.DigestDB.AmbiguousAminoAcidAction

Packages that use DigestDB.AmbiguousAminoAcidAction

Package	Description
org.expasy.mzjava.proteomics.ms.dbsearch

Uses of DigestDB.AmbiguousAminoAcidAction in org.expasy.mzjava.proteomics.ms.dbsearch

Methods in org.expasy.mzjava.proteomics.ms.dbsearch that return DigestDB.AmbiguousAminoAcidAction

Modifier and Type	Method and Description
static DigestDB.AmbiguousAminoAcidAction	DigestDB.AmbiguousAminoAcidAction.valueOf(String name) Returns the enum constant of this type with the specified name.
static DigestDB.AmbiguousAminoAcidAction[]	DigestDB.AmbiguousAminoAcidAction.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.expasy.mzjava.proteomics.ms.dbsearch with parameters of type DigestDB.AmbiguousAminoAcidAction

Modifier and Type	Method and Description
PeptideSpectrumDB.DigestDSL	PeptideSpectrumDB.DigestDSL.onAmbiguousAminoAcid(DigestDB.AmbiguousAminoAcidAction ambiguousAminoAcidAction) Set what happens when an ambiguous amino acid is found.
ArrayDigestDB.Builder	ArrayDigestDB.Builder.setAmbiguousAminoAcidAction(DigestDB.AmbiguousAminoAcidAction ambiguousAminoAcidAction) Set what action the ArrayDigestDB is to take if ambiguous amino acids are encountered.

Constructors in org.expasy.mzjava.proteomics.ms.dbsearch with parameters of type DigestDB.AmbiguousAminoAcidAction

Constructor and Description
ArrayDigestDB(IterativeReader<Protein> proteinReader, ProteinDigester proteinDigester, DigestDB.AmbiguousAminoAcidAction ambiguousAminoAcidAction) Construct a new ArrayDigestDB.