org.expasy.mzjava.proteomics.ms.dbsearch

Enum DigestDB.AmbiguousAminoAcidAction

java.lang.Object

java.lang.Enum<DigestDB.AmbiguousAminoAcidAction>

org.expasy.mzjava.proteomics.ms.dbsearch.DigestDB.AmbiguousAminoAcidAction

All Implemented Interfaces:

Serializable, Comparable<DigestDB.AmbiguousAminoAcidAction>

Enclosing interface:

DigestDB

public static enum DigestDB.AmbiguousAminoAcidAction
extends Enum<DigestDB.AmbiguousAminoAcidAction>

The action to take if a peptide that have amino acids that are ambiguous (Z, B etc) are returned by the digester

Enum Constant Summary

Enum Constants

Enum Constant and Description
LOG_AND_SKIP
SKIP
THROW_EXCEPTION

Method Summary

Methods

Modifier and Type	Method and Description
static DigestDB.AmbiguousAminoAcidAction	valueOf(String name) Returns the enum constant of this type with the specified name.
static DigestDB.AmbiguousAminoAcidAction[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

THROW_EXCEPTION

public static final DigestDB.AmbiguousAminoAcidAction THROW_EXCEPTION

LOG_AND_SKIP

public static final DigestDB.AmbiguousAminoAcidAction LOG_AND_SKIP

SKIP

public static final DigestDB.AmbiguousAminoAcidAction SKIP

Method Detail

values

public static DigestDB.AmbiguousAminoAcidAction[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (DigestDB.AmbiguousAminoAcidAction c : DigestDB.AmbiguousAminoAcidAction.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static DigestDB.AmbiguousAminoAcidAction valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null