org.expasy.mzjava.proteomics.avro.io

Class PeptideSpectrumWriter

java.lang.Object

org.expasy.mzjava.avro.io.AvroIO<AbstractAvroWriter>

org.expasy.mzjava.avro.io.AbstractAvroWriter<PL>

org.expasy.mzjava.avro.io.AbstractPeakListWriter<PeptideSpectrum>

org.expasy.mzjava.proteomics.avro.io.PeptideSpectrumWriter

All Implemented Interfaces:

AvroExternalizable, AvroWriter<PeptideSpectrum>

public class PeptideSpectrumWriter
extends AbstractPeakListWriter<PeptideSpectrum>

Version:

sqrt -1

Author:

Oliver Horlacher

Constructor Summary

Constructors

Constructor and Description
PeptideSpectrumWriter()
PeptideSpectrumWriter(com.google.common.base.Optional<PeakList.Precision> precisionOverride)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	createRecordFields(List<org.apache.avro.Schema.Field> fields) Create a list containing the Schema.Fields for the fields that this class writes
Class	getObjectClass()
void	write(PeptideSpectrum spectrum, org.apache.avro.io.Encoder out) Write the value to the encoder

Methods inherited from class org.expasy.mzjava.avro.io.AbstractPeakListWriter

writePeakList

Methods inherited from class org.expasy.mzjava.avro.io.AbstractAvroWriter

getRecordName, getRecordNameSpace, writeArray, writeMap, writeMap, writeMap, writeOptional, writeStringArray, writeUnion, writeUnionArray

Methods inherited from class org.expasy.mzjava.avro.io.AvroIO

createEnumSchema, createSchema, createSchemaField, createUnionSchema, createUnionSchema, getRecordDoc, getUnion, registerUnion, rewriteNameSpace

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.expasy.mzjava.avro.io.AvroExternalizable

createSchema

Constructor Detail

PeptideSpectrumWriter

public PeptideSpectrumWriter()

PeptideSpectrumWriter

public PeptideSpectrumWriter(com.google.common.base.Optional<PeakList.Precision> precisionOverride)

Method Detail

getObjectClass

public Class getObjectClass()

write

public void write(PeptideSpectrum spectrum,
         org.apache.avro.io.Encoder out)
           throws IOException

Description copied from interface: AvroWriter

Write the value to the encoder

Parameters:

spectrum - the value to write

out - the encoder

Throws:

IOException

createRecordFields

protected void createRecordFields(List<org.apache.avro.Schema.Field> fields)

Description copied from class: AvroIO

Create a list containing the Schema.Fields for the fields that this class writes

Overrides:

createRecordFields in class AbstractPeakListWriter<PeptideSpectrum>

Parameters:

fields - the list to add the fields to