Uses of Class
org.expasy.mzjava.glycomics.mol.SEdge

Packages that use SEdge

Package	Description
org.expasy.mzjava.glycomics.mol

Uses of SEdge in org.expasy.mzjava.glycomics.mol

Fields in org.expasy.mzjava.glycomics.mol with type parameters of type SEdge

Modifier and Type	Field and Description
protected List<SEdge>	SaccharideGraph.edges

Methods in org.expasy.mzjava.glycomics.mol that return SEdge

Modifier and Type	Method and Description
SEdge	GlycanFragment.Builder.addCleavedEdge(Monosaccharide attachPoint, SEdge edge, IonType ionType) Add a cleaved edge to the fragment.

Methods in org.expasy.mzjava.glycomics.mol that return types with arguments of type SEdge

Modifier and Type	Method and Description
List<SEdge>	SaccharideGraph.copyEdgeList() Returns a new list of all the edges.
Set<SEdge>	GlycanFragment.getCleavedEdges() Return a set of cleaved edge in the fragment
Set<SEdge>	CutDescriptor.getCleavedEdges() Return a set of all the cleaved edges in the CutDescriptor.

Methods in org.expasy.mzjava.glycomics.mol with parameters of type SEdge

Modifier and Type	Method and Description
SEdge	GlycanFragment.Builder.addCleavedEdge(Monosaccharide attachPoint, SEdge edge, IonType ionType) Add a cleaved edge to the fragment.
void	CutDescriptor.addCleavedEdge(SEdge edge) Add a cleaved edge to the CutDescriptor.
boolean	CutDescriptor.contains(SEdge edge) Check if the CutDescriptor contains the specified edge.
IonType	GlycanFragment.getIonType(SEdge edge)

Method parameters in org.expasy.mzjava.glycomics.mol with type arguments of type SEdge

Modifier and Type	Method and Description
void	CutDescriptor.addCleavedEdges(Set<SEdge> edges) Add a set of cleaved edge to the CutDescriptor.

Constructor parameters in org.expasy.mzjava.glycomics.mol with type arguments of type SEdge

Constructor and Description
CutDescriptor(Set<CleavedMonosaccharide> cleavedMonosaccharidesSet, Set<SEdge> cleavedEdges)
GlycanFragment(Monosaccharide root, FragmentType fragmentType, List<GlycanNode> nodes, List<SEdge> edges, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Monosaccharide,org.expasy.mzjava.glycomics.mol.GlycosidicEdge> monosaccharideEdgeMultimap, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Substituent,org.expasy.mzjava.glycomics.mol.SubstituentEdge> substituentEdgeMultimap, Composition endComposition, Map<CleavedMonosaccharide,IonType> monosaccharideIonTypeMap, Map<SEdge,IonType> edgeIonTypeMap)
GlycanFragment(Monosaccharide root, FragmentType fragmentType, List<GlycanNode> nodes, List<SEdge> edges, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Monosaccharide,org.expasy.mzjava.glycomics.mol.GlycosidicEdge> monosaccharideEdgeMultimap, org.expasy.mzjava.glycomics.mol.IdentityEdgeMultimap<Monosaccharide,Substituent,org.expasy.mzjava.glycomics.mol.SubstituentEdge> substituentEdgeMultimap, Composition endComposition, Map<CleavedMonosaccharide,IonType> monosaccharideIonTypeMap, Map<SEdge,IonType> edgeIonTypeMap)