Serialized Form

Package org.expasy.mzjava.core.io.ms.spectrum

Class org.expasy.mzjava.core.io.ms.spectrum.MzxmlReader.ConsistencyCheckException extends RuntimeException implements Serializable

Serialized Fields

consistencyCheck

MzxmlReader.ConsistencyCheck consistencyCheck

shortMessage

String shortMessage

Package org.expasy.mzjava.core.ms.cluster

Class org.expasy.mzjava.core.ms.cluster.JungSimGraphWrapper extends edu.uci.ics.jung.graph.AbstractTypedGraph<V,SimEdge<V>> implements Serializable

Serialized Fields

simGraph

SimilarityGraph<V> simGraph

Package org.expasy.mzjava.core.ms.peaklist

Class org.expasy.mzjava.core.ms.peaklist.PeakListComparator extends Object implements Serializable

Class org.expasy.mzjava.core.ms.peaklist.UnsortedPeakListException extends RuntimeException implements Serializable

Serialized Fields

peakIndex

int peakIndex

Package org.expasy.mzjava.core.ms.spectrum

Class org.expasy.mzjava.core.ms.spectrum.RetentionTimeComparator extends Object implements Serializable

Class org.expasy.mzjava.core.ms.spectrum.RetentionTimeList extends ArrayList<RetentionTime> implements Serializable

Class org.expasy.mzjava.core.ms.spectrum.ScanNumberList extends ArrayList<ScanNumber> implements Serializable

Package org.expasy.mzjava.external.io.ms.spectrum

Class org.expasy.mzjava.external.io.ms.spectrum.ConsistencyCheckException extends RuntimeException implements Serializable

Package org.expasy.mzjava.proteomics.io.ms.ident

Class org.expasy.mzjava.proteomics.io.ms.ident.CorruptedPSMFileException extends RuntimeException implements Serializable

Package org.expasy.mzjava.proteomics.mol

Class org.expasy.mzjava.proteomics.mol.PeptideParseException extends IllegalArgumentException implements Serializable

Package org.expasy.mzjava.proteomics.mol.digest

Class org.expasy.mzjava.proteomics.mol.digest.CleavageSiteParseException extends IllegalArgumentException implements Serializable

Serialized Fields

offset

int offset

The zero-based character offset into the string being parsed at which the error was found during parsing.

Package org.expasy.mzjava.proteomics.ms.ident

Class org.expasy.mzjava.proteomics.ms.ident.PeptideMatchComparator extends Object implements Serializable

Serialized Fields

scoreName

String scoreName

Class org.expasy.mzjava.proteomics.ms.ident.UnresolvableModificationMatchException extends RuntimeException implements Serializable

Serialized Fields

match

ModificationMatch match

Package org.expasy.mzjava.spark

Class org.expasy.mzjava.spark.Cached extends Object implements Serializable

Class org.expasy.mzjava.spark.CachedAbsoluteTolerance extends Cached<Tolerance> implements Serializable

Serialized Fields

error

double error

Class org.expasy.mzjava.spark.CachedPpmTolerance extends Cached<Tolerance> implements Serializable

Serialized Fields

ppmTolerance

double ppmTolerance