Uses of Interface
org.expasy.mzjava.proteomics.ms.dbsearch.DigestDB

Packages that use DigestDB

Package	Description
org.expasy.mzjava.proteomics.ms.dbsearch

Uses of DigestDB in org.expasy.mzjava.proteomics.ms.dbsearch

Classes in org.expasy.mzjava.proteomics.ms.dbsearch that implement DigestDB

Modifier and Type	Class and Description
class	ArrayDigestDB A peptide digest db that stores peptide digests in ram and is backed by an array.

Methods in org.expasy.mzjava.proteomics.ms.dbsearch with parameters of type DigestDB

Modifier and Type	Method and Description
PeptideSpectrumDB.FragmentDSL	PeptideSpectrumDB.DigestSourceDSL.setDigestDB(DigestDB digestDB)

Constructors in org.expasy.mzjava.proteomics.ms.dbsearch with parameters of type DigestDB

Constructor and Description
PeptideSpectrumDB(Tolerance precursorTolerance, PeptideFragmenter fragmenter, DigestDB digestDB, PeptideSpectrumCache peptideSpectrumCache, PeakProcessorChain<PepFragAnnotation> processorChain) Construct a PeptideSpectrumDB backed by the fragmenter, proteinDB and peptideSpectrumCache.